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Structure of a triple-helix region of human ReCol 3 from Trautec
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3A1H
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.2M Li2SO4, 0.1M Bis-Tris pH6.5, 25% PEG3,350
Crystal Properties Matthews coefficient Solvent content 1.97 37.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 17.867 α = 90 b = 21.225 β = 90.636 c = 89.138 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2023-06-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL18U1 0.97853 SSRF BL18U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 89.13 99.4 0.994 6.7 3.7 10965
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.53 0.882
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.5 44.606 10955 531 99.221 0.193 0.1907 0.1977 0.232 0.2353 20.281
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.257 -0.267 -2.688 2.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.229 r_dihedral_angle_3_deg 13.164 r_dihedral_angle_4_deg 12.461 r_dihedral_angle_1_deg 5.112 r_rigid_bond_restr 3.787 r_lrange_it 3.077 r_lrange_other 2.98 r_scangle_it 2.398 r_scangle_other 2.355 r_scbond_it 2.006
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.229 r_dihedral_angle_3_deg 13.164 r_dihedral_angle_4_deg 12.461 r_dihedral_angle_1_deg 5.112 r_rigid_bond_restr 3.787 r_lrange_it 3.077 r_lrange_other 2.98 r_scangle_it 2.398 r_scangle_other 2.355 r_scbond_it 2.006 r_mcangle_other 1.971 r_mcangle_it 1.966 r_scbond_other 1.948 r_angle_refined_deg 1.809 r_mcbond_other 1.729 r_mcbond_it 1.727 r_angle_other_deg 1.335 r_symmetry_xyhbond_nbd_refined 0.208 r_nbd_other 0.206 r_symmetry_nbd_other 0.197 r_nbd_refined 0.191 r_xyhbond_nbd_refined 0.182 r_nbtor_refined 0.161 r_ncsr_local_group_3 0.128 r_ncsr_local_group_1 0.109 r_chiral_restr_other 0.103 r_symmetry_nbd_refined 0.094 r_symmetry_nbtor_other 0.085 r_chiral_restr 0.073 r_ncsr_local_group_2 0.07 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 551 Nucleic Acid Atoms Solvent Atoms 107 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing