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Cryo-EM structure of SV2A in complex with BoNT/A2 Hc
Refinement RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 49.514 r_long_range_B_other 49.514 r_scangle_other 31.545 r_mcangle_it 29.81 r_mcangle_other 29.807 r_scbond_it 20.036 r_scbond_other 20.034 r_mcbond_it 19.827 r_mcbond_other 19.815 r_dihedral_angle_3_deg 14.504
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 49.514 r_long_range_B_other 49.514 r_scangle_other 31.545 r_mcangle_it 29.81 r_mcangle_other 29.807 r_scbond_it 20.036 r_scbond_other 20.034 r_mcbond_it 19.827 r_mcbond_other 19.815 r_dihedral_angle_3_deg 14.504 r_dihedral_angle_1_deg 4.777 r_dihedral_angle_2_deg 3.154 r_angle_refined_deg 1.301 r_angle_other_deg 0.433 r_chiral_restr 0.065 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_gen_planes_other 0.001 r_bond_other_d r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample SV2A in complex with BoNT/A2 Hc domain
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 5101376 Reported Resolution (Å) 3.01 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 50
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 800 Maximum Defocus (nm) 2000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC CTF CORRECTION cryoSPARC MODEL FITTING Coot MODEL REFINEMENT REFMAC INITIAL EULER ASSIGNMENT cryoSPARC FINAL EULER ASSIGNMENT cryoSPARC CLASSIFICATION cryoSPARC RECONSTRUCTION cryoSPARC
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 1146283