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RBD of SARS-CoV2 spike protein with ACE2 decoy
Refinement RMS Deviations Key Refinement Restraint Deviation r_long_range_B_other 34.51 r_long_range_B_refined 34.501 r_scangle_other 22.56 r_mcangle_it 18.037 r_mcangle_other 18.035 r_dihedral_angle_3_deg 14.742 r_scbond_it 13.337 r_scbond_other 13.335 r_mcbond_it 11.051 r_mcbond_other 11.049
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_other 34.51 r_long_range_B_refined 34.501 r_scangle_other 22.56 r_mcangle_it 18.037 r_mcangle_other 18.035 r_dihedral_angle_3_deg 14.742 r_scbond_it 13.337 r_scbond_other 13.335 r_mcbond_it 11.051 r_mcbond_other 11.049 r_dihedral_angle_2_deg 7.743 r_dihedral_angle_1_deg 7.507 r_angle_refined_deg 1.733 r_angle_other_deg 0.561 r_chiral_restr 0.086 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_gen_planes_other 0.001 r_bond_other_d r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample RBD of SARS-CoV2 spike protein with ACE2 decoy. Sample Components ACE2 SARS-CoV2 spike protein
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 144754 Reported Resolution (Å) 3.4 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 60
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 800 Maximum Defocus (nm) 1800 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 0.085 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC IMAGE ACQUISITION SerialEM 4 CTF CORRECTION cryoSPARC INITIAL EULER ASSIGNMENT cryoSPARC FINAL EULER ASSIGNMENT cryoSPARC CLASSIFICATION cryoSPARC RECONSTRUCTION cryoSPARC
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 880910