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Structure of the transmembrane domain of human PD-L2
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.5 mM [U-15N] PD-L2_TM 90% H2O/10% D2O 0 mM 6.5 0.1 atm 310 Bruker AVANCE 600 2 2D 1H-13C HSQC 0.5 mM [U-13C; U-15N] PD-L2_TM 90% H2O/10% D2O 0 mM 6.5 0.1 atm 310 Bruker AVANCE 900 3 3D HNCO 0.5 mM [U-13C; U-15N; U-2H] PD-L2_TM 90% H2O/10% D2O 0 mM 6.5 0.1 atm 310 Bruker AVANCE 600 4 3D HNCA 0.5 mM [U-13C; U-15N; U-2H] PD-L2_TM 90% H2O/10% D2O 0 mM 6.5 0.1 atm 310 Bruker AVANCE 600 5 3D HN(CA)CO 0.5 mM [U-13C; U-15N; U-2H] PD-L2_TM 90% H2O/10% D2O 0 mM 6.5 0.1 atm 310 Bruker AVANCE 600 6 3D HN(CO)CA 0.5 mM [U-13C; U-15N; U-2H] PD-L2_TM 90% H2O/10% D2O 0 mM 6.5 0.1 atm 310 Bruker AVANCE 600 7 3D HNCACB 0.5 mM [U-13C; U-15N; U-2H] PD-L2_TM 90% H2O/10% D2O 0 mM 6.5 0.1 atm 310 Bruker AVANCE 600 8 3D 1H-15N NOESY 0.5 mM [U-13C; U-15N] PD-L2_TM 90% H2O/10% D2O 0 mM 6.5 0.1 atm 310 Bruker AVANCE 900 9 3D 1H-13C NOESY 0.5 mM [U-13C; U-15N] PD-L2_TM 90% H2O/10% D2O 0 mM 6.5 0.1 atm 310 Bruker AVANCE 900
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600 2 Bruker AVANCE 900
NMR Refinement Method Details Software simulated annealing X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 15 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 2 structure calculation X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 3 chemical shift assignment XEASY Bartels et al. 4 peak picking XEASY Bartels et al. 5 collection TopSpin Bruker Biospin 6 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax