Experiment: 8J2Y

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		277	8% PEG 20,000, 8% PEG 550 MME, 0.1M Sodium acetate pH5.5, 0.2M Potassium thiocyanate

Crystal Properties
Matthews coefficient	Solvent content
2.85	56.9

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 108.773	α = 90
b = 125.836	β = 90
c = 124.63	γ = 90

Symmetry
Space Group	C 2 2 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER2 XE 16M		2021-10-09	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I04	0.9795	Diamond	I04

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.3	44.31	99.86	0.1766	6.95	13.7		38287

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.3	2.382	99.79		0.9439	0.94	13.3

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	2.3	44.31	36286	1996	99.97	0.21085	0.20935	0.23664	RANDOM	63.721

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.19			-2.59		2.4

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	15.656
r_dihedral_angle_1_deg	7.819
r_long_range_B_other	6.269
r_long_range_B_refined	6.267
r_scangle_other	2.708
r_mcangle_it	2.685
r_mcangle_other	2.685
r_angle_refined_deg	1.768
r_scbond_it	1.711
r_scbond_other	1.691

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	15.656
r_dihedral_angle_1_deg	7.819
r_long_range_B_other	6.269
r_long_range_B_refined	6.267
r_scangle_other	2.708
r_mcangle_it	2.685
r_mcangle_other	2.685
r_angle_refined_deg	1.768
r_scbond_it	1.711
r_scbond_other	1.691
r_mcbond_it	1.636
r_mcbond_other	1.624
r_angle_other_deg	0.535
r_chiral_restr	0.088
r_bond_refined_d	0.014
r_gen_planes_refined	0.006
r_bond_other_d	0.003
r_gen_planes_other	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4874
Nucleic Acid Atoms
Solvent Atoms	128
Heterogen Atoms	231

Software

Software
Software Name	Purpose
REFMAC	refinement
DIALS	data reduction
XSCALE	data scaling
PHASER	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.