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Structures of the C-terminal subenzyme of the malonyl-CoA reductase from Chloroflexus aurantiacus
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2UVD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 The protein was crystallized in drops containing 1.5 ul protein solution (10 mg/ml) and 1.5 ul reservoir solution (900 mM ammonium tartrate pH 6.0)
Crystal Properties Matthews coefficient Solvent content 2.99 58.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.41 α = 90 b = 139.46 β = 98.24 c = 73.87 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-11-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 0.97852 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.877 72.902 97.7 0.051 0.056 0.021 1 21.9 7 68842
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.877 1.883 97.9 0.705 0.76 0.282 0.877 2.3 7.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.88 27.53 68471 3400 97.7 0.177 0.176 0.1742 0.201 0.1982 RANDOM 38.69
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -9.2189 4.219 3.6959 5.523
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 15.97 t_omega_torsion 3.19 t_angle_deg 0.95 t_bond_d 0.01 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 15.97 t_omega_torsion 3.19 t_angle_deg 0.95 t_bond_d 0.01 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it t_nbd t_improper_torsion t_chiral_improper_torsion t_sum_occupancies t_utility_distance t_utility_angle t_utility_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5000 Nucleic Acid Atoms Solvent Atoms 342 Heterogen Atoms 16
Software Software Software Name Purpose BUSTER refinement XDS data reduction Aimless data scaling PHASER phasing