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Functional significance of serine 13 in the active site of rice Phi-class glutathione S-transferase F3.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BX9 1BX9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8.5 293 0.2M sodium acetate, 0.1M Tris HCl, 30 % (w/v) polyethylene glycol 4000
Crystal Properties Matthews coefficient Solvent content 2.14 42.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.96 α = 90 b = 48.12 β = 102.33 c = 80.34 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2013-11-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 0.978 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 78.484 98.8 0.073 0.086 0.045 10.5 3.6 45629 45629
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.79 93.5 0.379 0.379 0.277 1.9 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1BX9 1.7 50 45615 2313 98.7 0.181 0.1811 0.2071 0.207 21.9382
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.967 -4.455 -1.7 2.668
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 3.316 c_scbond_it 2.196 c_mcangle_it 1.728 c_angle_d 1.204 c_mcbond_it 1.183 c_bond_d 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3426 Nucleic Acid Atoms Solvent Atoms 421 Heterogen Atoms 40
Software Software Software Name Purpose Blu-Ice data collection DENZO data reduction MOLREP phasing CNS refinement PDB_EXTRACT data extraction HKL-2000 data scaling MOLREP phasing