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Co-crystal structure of FTO bound to 22
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4QKN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 291 100 mM sodium citrate, pH 5.4, 11.5% (w/v) polyethylene glycol (PEG) 3350, and 8% isopropanol
Crystal Properties Matthews coefficient Solvent content 2.91 57.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 142.189 α = 90 b = 142.189 β = 90 c = 84.358 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2022-08-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL02U1 0.9792 SSRF BL02U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.14 71.09 99.1 0.061 10.5 3.6 34944
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.14 2.25 100 0.386 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.14 71.09 33131 1614 99.04 0.22243 0.22159 0.2268 0.2392 0.2416 RANDOM 41.946
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.13 -0.06 -0.13 0.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.419 r_dihedral_angle_3_deg 11.949 r_dihedral_angle_4_deg 10.213 r_dihedral_angle_1_deg 5.672 r_long_range_B_refined 3.407 r_long_range_B_other 3.406 r_mcangle_it 1.767 r_mcangle_other 1.767 r_scangle_other 1.327 r_angle_refined_deg 1.075
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.419 r_dihedral_angle_3_deg 11.949 r_dihedral_angle_4_deg 10.213 r_dihedral_angle_1_deg 5.672 r_long_range_B_refined 3.407 r_long_range_B_other 3.406 r_mcangle_it 1.767 r_mcangle_other 1.767 r_scangle_other 1.327 r_angle_refined_deg 1.075 r_mcbond_it 0.993 r_mcbond_other 0.993 r_angle_other_deg 0.894 r_scbond_it 0.763 r_scbond_other 0.76 r_chiral_restr 0.057 r_bond_refined_d 0.007 r_gen_planes_other 0.006 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3386 Nucleic Acid Atoms Solvent Atoms 78 Heterogen Atoms 44
Software Software Software Name Purpose REFMAC refinement HKL-2000 data scaling HKL-2000 data reduction PHASER phasing