8I53 | pdb_00008i53

Solution structure of the PH domain from the Tfb1 subunit of fission yeast TFIIH

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.9 mM [U-15N] Tfb1	90% H2O/10% D2O	0 mM	6.8	1 bar	298	Bruker AVANCE III HD 950
2	2D 1H-13C HSQC	0.9 mM [U-13C; U-15N] Tfb1	100% D2O	0 mM	6.8	1 bar	298	Bruker AVANCE III HD 950
3	2D 1H-13C HSQC aromatic	0.9 mM [U-13C; U-15N] Tfb1	100% D2O	0 mM	6.8	1 bar	298	Bruker AVANCE III HD 950
4	3D CBCA(CO)NH	0.9 mM [U-13C; U-15N] Tfb1	90% H2O/10% D2O	0 mM	6.8	1 bar	298	Bruker AVANCE III HD 600
5	3D HNCACB	0.9 mM [U-13C; U-15N] Tfb1	90% H2O/10% D2O	0 mM	6.8	1 bar	298	Bruker AVANCE III HD 600
6	3D HN(CO)CA	0.9 mM [U-13C; U-15N] Tfb1	90% H2O/10% D2O	0 mM	6.8	1 bar	298	Bruker AVANCE III HD 600
7	3D HNCA	0.9 mM [U-13C; U-15N] Tfb1	90% H2O/10% D2O	0 mM	6.8	1 bar	298	Bruker AVANCE III HD 600
8	3D HNCO	0.9 mM [U-13C; U-15N] Tfb1	90% H2O/10% D2O	0 mM	6.8	1 bar	298	Bruker AVANCE III HD 600
9	3D HN(CA)CO	0.9 mM [U-13C; U-15N] Tfb1	90% H2O/10% D2O	0 mM	6.8	1 bar	298	Bruker AVANCE III HD 600
10	3D HBHA(CO)NH	0.9 mM [U-13C; U-15N] Tfb1	90% H2O/10% D2O	0 mM	6.8	1 bar	298	Bruker AVANCE III HD 600
11	3D HBHANH	0.9 mM [U-13C; U-15N] Tfb1	90% H2O/10% D2O	0 mM	6.8	1 bar	298	Bruker AVANCE III HD 600
12	3D C(CO)NH	0.9 mM [U-13C; U-15N] Tfb1	90% H2O/10% D2O	0 mM	6.8	1 bar	298	Bruker AVANCE III HD 600
13	3D H(CCO)NH	0.9 mM [U-13C; U-15N] Tfb1	90% H2O/10% D2O	0 mM	6.8	1 bar	298	Bruker AVANCE III HD 600
14	3D HN(CO)HB	0.9 mM [U-13C; U-15N] Tfb1	90% H2O/10% D2O	0 mM	6.8	1 bar	298	Bruker AVANCE III HD 600
15	3D HNHB	0.9 mM [U-13C; U-15N] Tfb1	90% H2O/10% D2O	0 mM	6.8	1 bar	298	Bruker AVANCE III HD 600
16	3D HN(CO)CG	0.9 mM [U-13C; U-15N] Tfb1	90% H2O/10% D2O	0 mM	6.8	1 bar	298	Bruker AVANCE III HD 600
17	3D HNCG	0.9 mM [U-13C; U-15N] Tfb1	90% H2O/10% D2O	0 mM	6.8	1 bar	298	Bruker AVANCE III HD 600
18	3D 1H-15N NOESY	0.9 mM [U-15N] Tfb1	90% H2O/10% D2O	0 mM	6.8	1 bar	298	Bruker AVANCE III HD 950
19	3D 1H-13C NOESY	0.9 mM [U-13C; U-15N] Tfb1	100% D2O	0 mM	6.8	1 bar	298	Bruker AVANCE III HD 950
20	3D 1H-13C NOESY aromatic	0.9 mM [U-13C; U-15N] Tfb1	100% D2O	0 mM	6.8	1 bar	298	Bruker AVANCE III HD 950

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III HD	950
2	Bruker	AVANCE III HD	600

NMR Refinement
Method	Details	Software
DGSA-distance geometry simulated annealing

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	processing	NMRDraw		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2	peak picking	MAGRO		Kobayashi, Iwahara, Koshiba, Tomizawa, Tochio, Guntert, Kigawa, Yokoyama
3	chemical shift assignment	MAGRO		Kobayashi, Iwahara, Koshiba, Tomizawa, Tochio, Guntert, Kigawa, Yokoyama
4	peak picking	NMRViewJ		Johnson, Blevins
5	chemical shift assignment	NMRViewJ		Johnson, Blevins