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Solution structure of the PH domain from the Tfb1 subunit of fission yeast TFIIH
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.9 mM [U-15N] Tfb1 90% H2O/10% D2O 0 mM 6.8 1 bar 298 Bruker AVANCE III HD 950 2 2D 1H-13C HSQC 0.9 mM [U-13C; U-15N] Tfb1 100% D2O 0 mM 6.8 1 bar 298 Bruker AVANCE III HD 950 3 2D 1H-13C HSQC aromatic 0.9 mM [U-13C; U-15N] Tfb1 100% D2O 0 mM 6.8 1 bar 298 Bruker AVANCE III HD 950 4 3D CBCA(CO)NH 0.9 mM [U-13C; U-15N] Tfb1 90% H2O/10% D2O 0 mM 6.8 1 bar 298 Bruker AVANCE III HD 600 5 3D HNCACB 0.9 mM [U-13C; U-15N] Tfb1 90% H2O/10% D2O 0 mM 6.8 1 bar 298 Bruker AVANCE III HD 600 6 3D HN(CO)CA 0.9 mM [U-13C; U-15N] Tfb1 90% H2O/10% D2O 0 mM 6.8 1 bar 298 Bruker AVANCE III HD 600 7 3D HNCA 0.9 mM [U-13C; U-15N] Tfb1 90% H2O/10% D2O 0 mM 6.8 1 bar 298 Bruker AVANCE III HD 600 8 3D HNCO 0.9 mM [U-13C; U-15N] Tfb1 90% H2O/10% D2O 0 mM 6.8 1 bar 298 Bruker AVANCE III HD 600 9 3D HN(CA)CO 0.9 mM [U-13C; U-15N] Tfb1 90% H2O/10% D2O 0 mM 6.8 1 bar 298 Bruker AVANCE III HD 600 10 3D HBHA(CO)NH 0.9 mM [U-13C; U-15N] Tfb1 90% H2O/10% D2O 0 mM 6.8 1 bar 298 Bruker AVANCE III HD 600 11 3D HBHANH 0.9 mM [U-13C; U-15N] Tfb1 90% H2O/10% D2O 0 mM 6.8 1 bar 298 Bruker AVANCE III HD 600 12 3D C(CO)NH 0.9 mM [U-13C; U-15N] Tfb1 90% H2O/10% D2O 0 mM 6.8 1 bar 298 Bruker AVANCE III HD 600 13 3D H(CCO)NH 0.9 mM [U-13C; U-15N] Tfb1 90% H2O/10% D2O 0 mM 6.8 1 bar 298 Bruker AVANCE III HD 600 14 3D HN(CO)HB 0.9 mM [U-13C; U-15N] Tfb1 90% H2O/10% D2O 0 mM 6.8 1 bar 298 Bruker AVANCE III HD 600 15 3D HNHB 0.9 mM [U-13C; U-15N] Tfb1 90% H2O/10% D2O 0 mM 6.8 1 bar 298 Bruker AVANCE III HD 600 16 3D HN(CO)CG 0.9 mM [U-13C; U-15N] Tfb1 90% H2O/10% D2O 0 mM 6.8 1 bar 298 Bruker AVANCE III HD 600 17 3D HNCG 0.9 mM [U-13C; U-15N] Tfb1 90% H2O/10% D2O 0 mM 6.8 1 bar 298 Bruker AVANCE III HD 600 18 3D 1H-15N NOESY 0.9 mM [U-15N] Tfb1 90% H2O/10% D2O 0 mM 6.8 1 bar 298 Bruker AVANCE III HD 950 19 3D 1H-13C NOESY 0.9 mM [U-13C; U-15N] Tfb1 100% D2O 0 mM 6.8 1 bar 298 Bruker AVANCE III HD 950 20 3D 1H-13C NOESY aromatic 0.9 mM [U-13C; U-15N] Tfb1 100% D2O 0 mM 6.8 1 bar 298 Bruker AVANCE III HD 950
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III HD 950 2 Bruker AVANCE III HD 600
NMR Refinement Method Details Software DGSA-distance geometry simulated annealing
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRDraw Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 2 peak picking MAGRO Kobayashi, Iwahara, Koshiba, Tomizawa, Tochio, Guntert, Kigawa, Yokoyama 3 chemical shift assignment MAGRO Kobayashi, Iwahara, Koshiba, Tomizawa, Tochio, Guntert, Kigawa, Yokoyama 4 peak picking NMRViewJ Johnson, Blevins 5 chemical shift assignment NMRViewJ Johnson, Blevins