☰ Navigation Tabs
CRYSTAL STRUCTURE OF BAT MHC CLASS I MYLU-B-67 FOR 2.2 ANGSTROM
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6ILC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 300 0.2 M Ammonium sulfate 0.1 M Tris 12 % w/v PEG 8000
Crystal Properties Matthews coefficient Solvent content 2.41 48.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.926 α = 90 b = 80.431 β = 90 c = 82.125 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2022-10-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 0.987 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.98 50 99.7 0.12 13.105 6.6 23537
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.98 2.01 0.325
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 43.07 21263 1074 99.46 0.21368 0.21174 0.2173 0.25273 0.2439 RANDOM 32.973
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.55 1.21 -1.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.277 r_dihedral_angle_4_deg 20.55 r_dihedral_angle_3_deg 17.685 r_dihedral_angle_1_deg 7.955 r_long_range_B_other 6.444 r_long_range_B_refined 6.442 r_scangle_other 5.161 r_mcangle_it 4.121 r_mcangle_other 4.12 r_scbond_it 3.478
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.277 r_dihedral_angle_4_deg 20.55 r_dihedral_angle_3_deg 17.685 r_dihedral_angle_1_deg 7.955 r_long_range_B_other 6.444 r_long_range_B_refined 6.442 r_scangle_other 5.161 r_mcangle_it 4.121 r_mcangle_other 4.12 r_scbond_it 3.478 r_scbond_other 3.477 r_mcbond_other 2.912 r_mcbond_it 2.911 r_angle_refined_deg 1.631 r_angle_other_deg 1.306 r_chiral_restr 0.079 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3139 Nucleic Acid Atoms Solvent Atoms 85 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling PHASER phasing