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Crystal structure of barley exohydrolase isoform ExoI E220A mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other PDB 3WLI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277 1.7 M ammonium sulfate, 75 mM HEPES-NaOH buffer, pH 7, containing 7.5 mM sodium acetate and 1.2% (w/v) PEG 400
Crystal Properties Matthews coefficient Solvent content 3.49 64.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.233 α = 90 b = 100.233 β = 90 c = 183.174 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r COLLIMATING MIRROR 2010-03-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.9537 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.79 87.93 95.3 0.998 48.6 24.8 79237
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.79 1.84 0.998
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3WLI 1.79 87.93 79237 4186 95.3 0.14355 0.1416 0.18048 0.1818 RANDOM 40.555
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.53 1.53 -3.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.229 r_dihedral_angle_4_deg 17.16 r_dihedral_angle_3_deg 12.751 r_dihedral_angle_1_deg 7.57 r_long_range_B_refined 7.229 r_long_range_B_other 7.008 r_scangle_other 5.543 r_scbond_it 4.446 r_scbond_other 4.43 r_mcangle_other 2.966
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.229 r_dihedral_angle_4_deg 17.16 r_dihedral_angle_3_deg 12.751 r_dihedral_angle_1_deg 7.57 r_long_range_B_refined 7.229 r_long_range_B_other 7.008 r_scangle_other 5.543 r_scbond_it 4.446 r_scbond_other 4.43 r_mcangle_other 2.966 r_mcangle_it 2.965 r_mcbond_it 2.628 r_mcbond_other 2.505 r_angle_refined_deg 2.429 r_angle_other_deg 1.762 r_chiral_restr 0.157 r_bond_refined_d 0.029 r_gen_planes_refined 0.015 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4592 Nucleic Acid Atoms Solvent Atoms 695 Heterogen Atoms 159
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing