8HE6

Crystal structure of a fosfomycin and bleomycin resistant protein (ALL3014) from Anabaena/Nostoc cyanobacterium at 1.70 A resolution


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP4.52980.2M lithium sulphate, 0.1M sodium acetate, 50 % PEG 400
Crystal Properties
Matthews coefficientSolvent content
2.5551.9

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 109.462α = 90
b = 109.462β = 90
c = 46.668γ = 90
Symmetry
Space GroupP 4 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHmirror2016-12-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALBA BEAMLINE XALOC1.0718ALBAXALOC

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.777.41950.0680.0720.9917.49.131802
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.79850.80.621.86

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE6A4X1.748.95330145146694.7930.1740.17150.217327.792
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.005-0.0050.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.438
r_dihedral_angle_4_deg19.015
r_dihedral_angle_3_deg14.298
r_lrange_it9.294
r_lrange_other9.247
r_dihedral_angle_1_deg6.486
r_scangle_it6.073
r_scangle_other6.069
r_mcangle_other4.855
r_mcangle_it4.851
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.438
r_dihedral_angle_4_deg19.015
r_dihedral_angle_3_deg14.298
r_lrange_it9.294
r_lrange_other9.247
r_dihedral_angle_1_deg6.486
r_scangle_it6.073
r_scangle_other6.069
r_mcangle_other4.855
r_mcangle_it4.851
r_scbond_it3.937
r_scbond_other3.928
r_mcbond_it3.156
r_mcbond_other3.143
r_angle_refined_deg1.568
r_angle_other_deg1.504
r_symmetry_xyhbond_nbd_refined0.234
r_nbd_refined0.21
r_nbd_other0.205
r_xyhbond_nbd_refined0.202
r_symmetry_nbd_other0.188
r_nbtor_refined0.171
r_symmetry_nbd_refined0.156
r_symmetry_xyhbond_nbd_other0.092
r_ncsr_local_group_10.088
r_chiral_restr0.087
r_symmetry_nbtor_other0.084
r_bond_refined_d0.01
r_gen_planes_refined0.009
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1934
Nucleic Acid Atoms
Solvent Atoms250
Heterogen Atoms2

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
SCALAdata scaling
Auto-Rickshawphasing