8HDK
Structure of the Rat GluN1-GluN2C NMDA receptor in complex with glycine and glutamate (minor class in symmetry)
ELECTRON MICROSCOPY
Sample |
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Rat GluN1-GluN2C NMDA receptor in complex with glycine and glutamate |
Specimen Preparation | |
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Sample Aggregation State | 2D ARRAY |
3D Reconstruction | |
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Reconstruction Method | SINGLE PARTICLE |
Number of Particles | 15479 |
Reported Resolution (Å) | 4.3 |
Resolution Method | FSC 0.143 CUT-OFF |
Other Details | |
Refinement Type | |
Symmetry Type | POINT |
Number of Particles | 15479 |
Reported Resolution (Å) | 4.3 |
Resolution Method | FSC 0.143 CUT-OFF |
Other Details | |
Refinement Type | |
Symmetry Type | POINT |
Number of Particles | 15479 |
Reported Resolution (Å) | 4.3 |
Resolution Method | FSC 0.143 CUT-OFF |
Other Details | |
Refinement Type | |
Symmetry Type | POINT |
Number of Particles | 15479 |
Reported Resolution (Å) | 4.3 |
Resolution Method | FSC 0.143 CUT-OFF |
Other Details | |
Refinement Type | |
Symmetry Type | POINT |
Map-Model Fitting and Refinement | |||||
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Id | 1 | ||||
Refinement Space | |||||
Refinement Protocol | |||||
Refinement Target | |||||
Overall B Value | |||||
Fitting Procedure | |||||
Details |
Data Acquisition | |||||||||
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Detector Type | DIRECT ELECTRON DE-10 (5k x 4k) | DIRECT ELECTRON DE-10 (5k x 4k) | |||||||
Electron Dose (electrons/Å**2) | 60 | 60 |
Imaging Experiment | 1 |
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Date of Experiment | |
Temperature (Kelvin) | |
Microscope Model | FEI TITAN KRIOS |
Minimum Defocus (nm) | 1200 |
Maximum Defocus (nm) | 2000 |
Minimum Tilt Angle (degrees) | |
Maximum Tilt Angle (degrees) | |
Nominal CS | |
Imaging Mode | BRIGHT FIELD |
Specimen Holder Model | |
Nominal Magnification | |
Calibrated Magnification | |
Source | FIELD EMISSION GUN |
Acceleration Voltage (kV) | 300 |
Imaging Details |
EM Software | ||
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Task | Software Package | Version |
PARTICLE SELECTION | cryoSPARC | |
CTF CORRECTION | Gctf | |
INITIAL EULER ASSIGNMENT | cryoSPARC | |
FINAL EULER ASSIGNMENT | cryoSPARC | |
CLASSIFICATION | cryoSPARC | |
RECONSTRUCTION | cryoSPARC | |
PARTICLE SELECTION | cryoSPARC | |
CTF CORRECTION | Gctf | |
INITIAL EULER ASSIGNMENT | cryoSPARC | |
FINAL EULER ASSIGNMENT | cryoSPARC | 3.1 |
CLASSIFICATION | cryoSPARC | |
RECONSTRUCTION | cryoSPARC | |
RECONSTRUCTION | RELION | 3.1 |
Image Processing | |||||
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CTF Correction Type | CTF Correction Details | Number of Particles Selected | Particle Selection Details | ||
PHASE FLIPPING AND AMPLITUDE CORRECTION | 1188229 | ||||
PHASE FLIPPING AND AMPLITUDE CORRECTION | 1188229 | ||||
PHASE FLIPPING AND AMPLITUDE CORRECTION | 1188229 | ||||
PHASE FLIPPING AND AMPLITUDE CORRECTION | 1188229 |