8H0S | pdb_00008h0s

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	4PON	PDB entry 4PON

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP		293	0.2 M Ammonium acetate, 0.1 M Sodium citrate tribasic dehydrate pH5.6, 30% w/v Polyethylene glycol 4,000, 3% w/v Trimethylamine N-oxide dihydrate

Crystal Properties
Matthews coefficient	Solvent content
2.43	49.48

Symmetry
Space Group	P 1

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 9M		2022-04-29	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	PAL/PLS BEAMLINE 5C (4A)	1.0000	PAL/PLS	5C (4A)

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.9	93.88	91.2	0.165	0.195	0.102	0.992	6.6	3.5		18875

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.9	3.08	97.5		0.995	1.169	0.607	0.768	1.2	3.6

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	PDB entry 4PON	2.9	93.88	17930	901	90.98	0.24281	0.24076	0.24	0.2852	0.29	RANDOM	72.123

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
4.78	0.84	7.38	-8.95	1.66	3.52

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	17.538
r_long_range_B_refined	13.789
r_long_range_B_other	13.788
r_mcangle_it	10.157
r_mcangle_other	10.156
r_scangle_other	9.356
r_dihedral_angle_2_deg	8.287
r_dihedral_angle_1_deg	7.61
r_mcbond_it	6.268
r_mcbond_other	6.265

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	17.538
r_long_range_B_refined	13.789
r_long_range_B_other	13.788
r_mcangle_it	10.157
r_mcangle_other	10.156
r_scangle_other	9.356
r_dihedral_angle_2_deg	8.287
r_dihedral_angle_1_deg	7.61
r_mcbond_it	6.268
r_mcbond_other	6.265
r_scbond_it	5.763
r_scbond_other	5.76
r_angle_refined_deg	1.263
r_angle_other_deg	0.407
r_chiral_restr	0.056
r_bond_refined_d	0.005
r_gen_planes_refined	0.005
r_bond_other_d	0.001
r_gen_planes_other	0.001
r_dihedral_angle_4_deg
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	5423
Nucleic Acid Atoms	710
Solvent Atoms	110
Heterogen Atoms	108