8GS7 | pdb_00008gs7

SOLUTION NMR STRUCTURE OF N-TERMINAL DOMAIN OF TRICONEPHILA CLAVIPES MAJOR AMPULLATE SPIDROIN 2

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC; 2D 1H-13C HSQC ALIPHATIC; 2D 1H-13C HSQC AROMATIC; 3D CBCA(CO)NH; 3D HNCACB; 3D HNCO; 3D HN(CA)CO; 3D HNHAHB; 3D HBHA(CO)NH; 3D 1H-13C NOESY ALIPHATIC; 3D 1H-15N NOESY; 3D H(CCO)NH; 3D HCCH-TOCSY; 2D HB(CBCG)CD(HD); 2D HB(CBCGCD) CE(HE)	1 mM [U-13C; U-15N] N-terminal domain of NTD MaSp2 from Triconephila clavipes, 0.1 mM DSS, 10 % v/v [U-100% 2H] D2O, 300 mM sodium chloride, 10 mM sodium phosphate	90% H2O/10% D2O	300 mM	7	1 atm	298	Bruker AVANCE III 700
2	2D 1H-13C HSQC aliphatic	1 mM [U-13C; U-15N] N-terminal domain of NTD MaSp2 from Triconephila clavipes, 0.1 mM DSS, 10 % v/v [U-100% 2H] D2O, 300 mM sodium chloride, 10 mM sodium phosphate	90% H2O/10% D2O	300 mM	7	1 atm	298	Bruker AVANCE III 700
3	2D 1H-13C HSQC aromatic	1 mM [U-13C; U-15N] N-terminal domain of NTD MaSp2 from Triconephila clavipes, 0.1 mM DSS, 10 % v/v [U-100% 2H] D2O, 300 mM sodium chloride, 10 mM sodium phosphate	90% H2O/10% D2O	300 mM	7	1 atm	298	Bruker AVANCE III 700
4	3D CBCA(CO)NH	1 mM [U-13C; U-15N] N-terminal domain of NTD MaSp2 from Triconephila clavipes, 0.1 mM DSS, 10 % v/v [U-100% 2H] D2O, 300 mM sodium chloride, 10 mM sodium phosphate	90% H2O/10% D2O	300 mM	7	1 atm	298	Bruker AVANCE III 700
5	3D HNCACB	1 mM [U-13C; U-15N] N-terminal domain of NTD MaSp2 from Triconephila clavipes, 0.1 mM DSS, 10 % v/v [U-100% 2H] D2O, 300 mM sodium chloride, 10 mM sodium phosphate	90% H2O/10% D2O	300 mM	7	1 atm	298	Bruker AVANCE III 700
8	3D HNCO	1 mM [U-13C; U-15N] N-terminal domain of NTD MaSp2 from Triconephila clavipes, 0.1 mM DSS, 10 % v/v [U-100% 2H] D2O, 300 mM sodium chloride, 10 mM sodium phosphate	90% H2O/10% D2O	300 mM	7	1 atm	298	Bruker AVANCE III 700
7	3D HN(CA)CO	1 mM [U-13C; U-15N] N-terminal domain of NTD MaSp2 from Triconephila clavipes, 0.1 mM DSS, 10 % v/v [U-100% 2H] D2O, 300 mM sodium chloride, 10 mM sodium phosphate	90% H2O/10% D2O	300 mM	7	1 atm	298	Bruker AVANCE III 700
6	3D HBHA(CO)NH	1 mM [U-13C; U-15N] N-terminal domain of NTD MaSp2 from Triconephila clavipes, 0.1 mM DSS, 10 % v/v [U-100% 2H] D2O, 300 mM sodium chloride, 10 mM sodium phosphate	90% H2O/10% D2O	300 mM	7	1 atm	298	Bruker AVANCE III 700
9	3D HNHAHB	1 mM [U-13C; U-15N] N-terminal domain of NTD MaSp2 from Triconephila clavipes, 0.1 mM DSS, 10 % v/v [U-100% 2H] D2O, 300 mM sodium chloride, 10 mM sodium phosphate	90% H2O/10% D2O	300 mM	7	1 atm	298	Bruker AVANCE III 700
10	3D 1H-13C NOESY aliphatic	1 mM [U-13C; U-15N] N-terminal domain of NTD MaSp2 from Triconephila clavipes, 0.1 mM DSS, 10 % v/v [U-100% 2H] D2O, 300 mM sodium chloride, 10 mM sodium phosphate	90% H2O/10% D2O	300 mM	7	1 atm	298	Bruker AVANCE III 700
11	3D 1H-15N NOESY	1 mM [U-13C; U-15N] N-terminal domain of NTD MaSp2 from Triconephila clavipes, 0.1 mM DSS, 10 % v/v [U-100% 2H] D2O, 300 mM sodium chloride, 10 mM sodium phosphate	90% H2O/10% D2O	300 mM	7	1 atm	298	Bruker AVANCE III 700
12	3D H(CCO)NH	1 mM [U-13C; U-15N] N-terminal domain of NTD MaSp2 from Triconephila clavipes, 0.1 mM DSS, 10 % v/v [U-100% 2H] D2O, 300 mM sodium chloride, 10 mM sodium phosphate	90% H2O/10% D2O	300 mM	7	1 atm	298	Bruker AVANCE III 700
13	3D HCCH-TOCSY	1 mM [U-13C; U-15N] N-terminal domain of NTD MaSp2 from Triconephila clavipes, 0.1 mM DSS, 10 % v/v [U-100% 2H] D2O, 300 mM sodium chloride, 10 mM sodium phosphate	90% H2O/10% D2O	300 mM	7	1 atm	298	Bruker AVANCE III 700
14	2D HB(CBCGCD)CE(HE)	1 mM [U-13C; U-15N] N-terminal domain of NTD MaSp2 from Triconephila clavipes, 0.1 mM DSS, 10 % v/v [U-100% 2H] D2O, 300 mM sodium chloride, 10 mM sodium phosphate	90% H2O/10% D2O	300 mM	7	1 atm	298	Bruker AVANCE III 700
15	2D HB(CBCG)CD(HD)	1 mM [U-13C; U-15N] N-terminal domain of NTD MaSp2 from Triconephila clavipes, 0.1 mM DSS, 10 % v/v [U-100% 2H] D2O, 300 mM sodium chloride, 10 mM sodium phosphate	90% H2O/10% D2O	300 mM	7	1 atm	298	Bruker AVANCE III 700

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III	700
2	Bruker	AVANCE III	600

NMR Refinement
Method	Details	Software
molecular dynamics		X-PLOR NIH

NMR Ensemble Information
Conformer Selection Criteria	target function
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Additional NMR Experimental Information
Details	NULL

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2	chemical shift assignment	NMRFAM-SPARKY		Lee, Tonelli, Markley
3	chemical shift assignment	MagRO-NMRView		Kobayashi, Iwahara, Koshiba, Tomizawa, Tochio, Guntert, Kigawa, Yokoyama
4	structure calculation	CYANA		Guntert, Mumenthaler and Wuthrich
5	refinement	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.