8GFT

Hsp90 provides platform for CRaf dephosphorylation by PP5


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
f_dihedral_angle_d12.952
f_angle_d0.581
f_chiral_restr0.05
f_bond_d0.006
f_plane_restr0.004
Sample
Hsp90:Cdc37:CRaf:PP5 complex
Sample Components
Protein Phosphatase 5 (H304A)
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification Instrument
Cryogen NameETHANE
Sample Vitrification Details3uL OF SAMPLE, 10C, 100% HUMIDITY, 30S WAIT TIME, 3S BLOT TIME, -2 BLOT FORCE
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles545237
Reported Resolution (Å)3.8
Resolution MethodFSC 0.143 CUT-OFF
Other DetailsThree different maps were used for final composite map: Hsp90:Cdc37: 288k particles, 3.2A PP5 TPR: 215k particles, 3.3A PP5 catalytic domain: 43k p ...Three different maps were used for final composite map: Hsp90:Cdc37: 288k particles, 3.2A PP5 TPR: 215k particles, 3.3A PP5 catalytic domain: 43k particles, 3.8A Composite half maps were used to get the final resolution in Relion PostProcessing. All original maps provided in the "Related entries" tab.
Refinement Type
Symmetry TypePOINT
Map-Model Fitting and Refinement
Id1 (5FWL, 1WAO, 1S95)
Refinement Space
Refinement ProtocolRIGID BODY FIT
Refinement Target
Overall B Value
Fitting Procedure
DetailsThis model was built using rigid body docking in Chimera and ChimeraX for all main chains, and RosettaCM to add remaining fragments not included in pr ...This model was built using rigid body docking in Chimera and ChimeraX for all main chains, and RosettaCM to add remaining fragments not included in previous models. Refinement was done using iterative Phenix and RosettaRelax, and finalized with ISOLDE.
Data Acquisition
Detector TypeGATAN K3 BIOQUANTUM (6k x 4k)
Electron Dose (electrons/Å**2)69
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelFEI TITAN KRIOS
Minimum Defocus (nm)800
Maximum Defocus (nm)1800
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder ModelFEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification105000
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
PARTICLE SELECTIONcryoSPARC3.3.2
IMAGE ACQUISITIONSerialEM3.8-beta
CTF CORRECTIONRELION3.1.3
MODEL FITTINGISOLDE1.0b3
MODEL FITTINGUCSF Chimera1.15
MODEL FITTINGUCSF ChimeraX1.2.5
MODEL FITTINGRosetta3.11
MODEL FITTINGPHENIX1.20.1-4487
MODEL REFINEMENTPHENIX1.20.1-4487
INITIAL EULER ASSIGNMENTRELION3.1.3
FINAL EULER ASSIGNMENTRELION3.1.3
CLASSIFICATIONRELION3.1.3
RECONSTRUCTIONRELION3.1.3
RECONSTRUCTIONUCSF ChimeraX1.2.5
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION3730385Gaussian blob particle picking in cryosparc.