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Lysozyme Anomalous Dataset at 293 K and 12 keV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 298 5 uL of 0.6 M Sodium Chloride in 100 mM Sodium Acetate buffer pH 4.5 and 25% ethylene glycol were mixed with 5 uL 100 mg/mL lysozyme in 100 mM Sodium Acetate
Crystal Properties Matthews coefficient Solvent content 1.96 37.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.794 α = 90 b = 77.794 β = 90 c = 37.127 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 PIXEL DECTRIS EIGER X 16M 2020-01-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL14-1 1.0332 SSRL BL14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 35.06 95 0.092 0.013 1 27.9 53.9 34193 22.153
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.22 90.1 5.75 0.79 0.622 1.6 52.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 1.2 33.529 34193 1686 94.5 0.122 0.1209 0.1213 0.1462 0.1443 23.629
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.299 0.299 -0.599
RMS Deviations Key Refinement Restraint Deviation r_rigid_bond_restr 26.56 r_scbond_it 18.367 r_scbond_other 18.352 r_dihedral_angle_6_deg 16.754 r_scangle_other 14.388 r_dihedral_angle_3_deg 14.358 r_scangle_it 14.324 r_lrange_other 10.3 r_lrange_it 10.285 r_dihedral_angle_2_deg 9.644
RMS Deviations Key Refinement Restraint Deviation r_rigid_bond_restr 26.56 r_scbond_it 18.367 r_scbond_other 18.352 r_dihedral_angle_6_deg 16.754 r_scangle_other 14.388 r_dihedral_angle_3_deg 14.358 r_scangle_it 14.324 r_lrange_other 10.3 r_lrange_it 10.285 r_dihedral_angle_2_deg 9.644 r_dihedral_angle_1_deg 6.103 r_mcangle_it 4.958 r_mcangle_other 4.954 r_mcbond_it 4.731 r_mcbond_other 4.714 r_angle_refined_deg 1.801 r_angle_other_deg 0.661 r_xyhbond_nbd_refined 0.452 r_symmetry_xyhbond_nbd_refined 0.31 r_symmetry_nbd_refined 0.272 r_nbd_refined 0.263 r_nbd_other 0.262 r_symmetry_nbd_other 0.212 r_nbtor_refined 0.182 r_symmetry_xyhbond_nbd_other 0.157 r_chiral_restr 0.098 r_metal_ion_refined 0.096 r_symmetry_nbtor_other 0.083 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 89 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling SHELXDE phasing