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Salmonella typhimurium GTPase BIPA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 16-18% PEG 3350, 100 MM NA/K TARTRATE, 20 MM TRIS, PH 7.5.
CRYO SOLVENT 20% GLYCEROL
Crystal Properties Matthews coefficient Solvent content 2.67 53.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.414 α = 90 b = 83.702 β = 105.77 c = 95.408 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-08-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 0.97934 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) R Split (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.33 29.8 90.8 0.094 0.087 0.112 0.059 0.983 0.093 10.29 4 52682 35.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) R Split (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.33 2.41 54.1 0.199 0.195 0.264 0.167 0.868 0.24 3.35 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.33 29.78 50131 2551 90.64 0.2337 0.2312 0.234 0.283 0.2853 RANDOM 34.062
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.76 -0.11 -0.13 4.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.473 r_dihedral_angle_4_deg 16.307 r_dihedral_angle_3_deg 14.717 r_dihedral_angle_1_deg 5.249 r_angle_refined_deg 1.442 r_angle_other_deg 0.453 r_chiral_restr 0.066 r_gen_planes_refined 0.053 r_gen_planes_other 0.046 r_bond_refined_d 0.012
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.473 r_dihedral_angle_4_deg 16.307 r_dihedral_angle_3_deg 14.717 r_dihedral_angle_1_deg 5.249 r_angle_refined_deg 1.442 r_angle_other_deg 0.453 r_chiral_restr 0.066 r_gen_planes_refined 0.053 r_gen_planes_other 0.046 r_bond_refined_d 0.012 r_bond_other_d 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9044 Nucleic Acid Atoms Solvent Atoms 110 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE model building Coot model building