8EVN

Sulfatase from Mycobacterium tuberculosis (Rv3406) in complex with N-oxalylglycine (NOG)

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP		291	16% PEG2000, 100 mM Tris, pH 8.5, 2% MPD, 300 mM magnesium nitrate

Crystal Properties
Matthews coefficient	Solvent content
2.22	44.49

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 65.535	α = 90
b = 128.336	β = 90
c = 138.693	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M		2021-03-23	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	AUSTRALIAN SYNCHROTRON BEAMLINE MX2	0.95373	Australian Synchrotron	MX2

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.64	47.676	99.2	0.03	0.999	11.9	13.5		34771

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.64	2.77	94.5		0.381	0.86	1.2	13.3

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	PDB entry 4FFA	2.644	47.676	34635	1734	98.988	0.253	0.2502	0.2995	random selection	85.363

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
13.329			-6.662		-6.667

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	11.598
r_dihedral_angle_6_deg	10.454
r_dihedral_angle_2_deg	8.221
r_dihedral_angle_1_deg	5.415
r_lrange_it	2.578
r_lrange_other	2.578
r_scbond_it	1.219
r_scbond_other	1.217
r_mcangle_it	1.212
r_mcangle_other	1.212
r_scangle_it	1.187
r_scangle_other	1.187
r_mcbond_it	0.701
r_mcbond_other	0.7
r_angle_refined_deg	0.641
r_angle_other_deg	0.241
r_nbd_refined	0.172
r_symmetry_nbd_other	0.165
r_nbtor_refined	0.163
r_symmetry_xyhbond_nbd_refined	0.113
r_xyhbond_nbd_refined	0.103
r_nbd_other	0.092
r_symmetry_nbd_refined	0.084
r_symmetry_nbtor_other	0.077
r_chiral_restr	0.029
r_chiral_restr_other	0.021
r_bond_refined_d	0.002
r_gen_planes_refined	0.002
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	7227
Nucleic Acid Atoms
Solvent Atoms	13
Heterogen Atoms	52

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing