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Acheta domesticus segmented densovirus VP-ORF1 virus-like particle
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 17.45 f_angle_d 0.723 f_chiral_restr 0.054 f_bond_d 0.009 f_plane_restr 0.004
Sample unclassified Densovirinae
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 13019 Reported Resolution (Å) 3.3 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry I
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 60
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 570 Maximum Defocus (nm) 2570 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode OTHER Specimen Holder Model Nominal Magnification Calibrated Magnification Source OTHER Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cisTEM 1.0.0 CTF CORRECTION CTFFIND 4 MODEL FITTING UCSF Chimera 1.13.1 MODEL REFINEMENT Coot 0.8.9.3 MODEL REFINEMENT PHENIX 1.10.1 CLASSIFICATION cisTEM 1.0.0 RECONSTRUCTION cisTEM 1.0.0
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 18598