X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2910.2 M ammonium sulfate, 0.1 M HEPES, 35% w/v poly(acrylic acid sodium salt) 2100
Crystal Properties
Matthews coefficientSolvent content
2.3948.63

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 85.55α = 90
b = 85.55β = 90
c = 265.152γ = 90
Symmetry
Space GroupI 41 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2020-02-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAUSTRALIAN SYNCHROTRON BEAMLINE MX20.9537Australian SynchrotronMX2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.1345.0791.60.9961218.217134
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.132.3640.341

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE7ULI2.1345.071713392060.9070.2250.2230.26226.702
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.031-0.0310.061
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.549
r_dihedral_angle_3_deg16.661
r_dihedral_angle_4_deg16.226
r_dihedral_angle_1_deg7.359
r_lrange_it5.158
r_lrange_other5.157
r_scangle_it3.358
r_scangle_other3.357
r_mcangle_it3.109
r_mcangle_other3.108
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.549
r_dihedral_angle_3_deg16.661
r_dihedral_angle_4_deg16.226
r_dihedral_angle_1_deg7.359
r_lrange_it5.158
r_lrange_other5.157
r_scangle_it3.358
r_scangle_other3.357
r_mcangle_it3.109
r_mcangle_other3.108
r_scbond_it2.083
r_scbond_other2.082
r_mcbond_other1.89
r_mcbond_it1.889
r_angle_refined_deg1.52
r_angle_other_deg1.301
r_symmetry_nbd_other0.19
r_nbd_refined0.188
r_nbd_other0.186
r_nbtor_refined0.151
r_xyhbond_nbd_refined0.133
r_symmetry_nbd_refined0.117
r_symmetry_xyhbond_nbd_refined0.111
r_symmetry_nbtor_other0.085
r_chiral_restr0.062
r_bond_refined_d0.007
r_gen_planes_refined0.006
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2523
Nucleic Acid Atoms
Solvent Atoms19
Heterogen Atoms37

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
STARANISOdata scaling
PHASERphasing