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Complex of HMG1 with pitavastatin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7ULI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 0.2 M ammonium sulfate, 0.1 M HEPES, 35% w/v poly(acrylic acid sodium salt) 2100
Crystal Properties Matthews coefficient Solvent content 2.39 48.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.55 α = 90 b = 85.55 β = 90 c = 265.152 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2020-02-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.9537 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.13 45.07 91.6 0.996 12 18.2 17134
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.13 2.364 0.341
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 7ULI 2.13 45.07 17133 920 60.907 0.225 0.223 0.223 0.262 0.2623 26.702
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.031 -0.031 0.061
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.549 r_dihedral_angle_3_deg 16.661 r_dihedral_angle_4_deg 16.226 r_dihedral_angle_1_deg 7.359 r_lrange_it 5.158 r_lrange_other 5.157 r_scangle_it 3.358 r_scangle_other 3.357 r_mcangle_it 3.109 r_mcangle_other 3.108
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.549 r_dihedral_angle_3_deg 16.661 r_dihedral_angle_4_deg 16.226 r_dihedral_angle_1_deg 7.359 r_lrange_it 5.158 r_lrange_other 5.157 r_scangle_it 3.358 r_scangle_other 3.357 r_mcangle_it 3.109 r_mcangle_other 3.108 r_scbond_it 2.083 r_scbond_other 2.082 r_mcbond_other 1.89 r_mcbond_it 1.889 r_angle_refined_deg 1.52 r_angle_other_deg 1.301 r_symmetry_nbd_other 0.19 r_nbd_refined 0.188 r_nbd_other 0.186 r_nbtor_refined 0.151 r_xyhbond_nbd_refined 0.133 r_symmetry_nbd_refined 0.117 r_symmetry_xyhbond_nbd_refined 0.111 r_symmetry_nbtor_other 0.085 r_chiral_restr 0.062 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2523 Nucleic Acid Atoms Solvent Atoms 19 Heterogen Atoms 37
Software Software Software Name Purpose REFMAC refinement XDS data reduction STARANISO data scaling PHASER phasing