8DDD

Intramembrane recognition between transmembrane domains of IL-9R and common gamma chain


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N TROSY-HSQC0.4 mM 15N, 13C, 85%2H Transmembrane domain of the common gamma-chain receptor, 40 mM DMPC, 100 mM DH6PC90% H2O/10% D2O0.15 M6.71 atm303Bruker AVANCE III 600
22D 1H-15N TROSY-HSQC0.4 mM 15N, 13C, 85%2H Transmembrane domain of the Interleukin-9 receptor alpha subunit, 40 mM DMPC, 100 mM DH6PC90% H2O/10% D2O0.15 M6.71 atm303Bruker AVANCE III 600
32D 1H-15N TROSY-HSQC0.4 mM 13C Transmembrane domain of the Interleukin-9 receptor alpha subunit, 0.4 mM 15N, 2H Transmembrane domain of the common gamma-chain receptor, 80 mM deuterated DMPC, 200 mM deuterated DH6PC90% H2O/10% D2O0.15 M6.71 atm303Bruker AVANCE III 800
42D 1H-15N TROSY-HSQC0.4 mM 13C Transmembrane domain of the common gamma-chain receptor, 0.4 mM 15N, 2H Transmembrane domain of the Interleukin-9 receptor alpha subunit, 80 mM deuterated DMPC, 200 mM deuterated DH6PC90% H2O/10% D2O0.15 M6.71 atm303Bruker AVANCE III 800
52D 1H-13C HSQC0.4 mM 13C Transmembrane domain of the Interleukin-9 receptor alpha subunit, 0.4 mM 15N, 2H Transmembrane domain of the common gamma-chain receptor, 80 mM deuterated DMPC, 200 mM deuterated DH6PC90% H2O/10% D2O0.15 M6.71 atm303Bruker AVANCE III 800
62D 1H-13C HSQC0.4 mM 13C Transmembrane domain of the common gamma-chain receptor, 0.4 mM 15N, 2H Transmembrane domain of the Interleukin-9 receptor alpha subunit, 80 mM deuterated DMPC, 200 mM deuterated DH6PC90% H2O/10% D2O0.15 M6.71 atm303Bruker AVANCE III 800
73D TROSY HNCA0.4 mM 15N, 13C, 85%2H Transmembrane domain of the common gamma-chain receptor, 40 mM DMPC, 100 mM DH6PC90% H2O/10% D2O0.15 M6.71 atm303Bruker AVANCE III 600
83D TROSY HNCA0.4 mM 15N, 13C, 85%2H Transmembrane domain of the Interleukin-9 receptor alpha subunit, 40 mM DMPC, 100 mM DH6PC90% H2O/10% D2O0.15 M6.71 atm303Bruker AVANCE III 600
93D TROSY HN(CO)CA0.4 mM 15N, 13C, 85%2H Transmembrane domain of the common gamma-chain receptor, 40 mM DMPC, 100 mM DH6PC90% H2O/10% D2O0.15 M6.71 atm303Bruker AVANCE III 600
103D TROSY HN(CO)CA0.4 mM 15N, 13C, 85%2H Transmembrane domain of the Interleukin-9 receptor alpha subunit, 40 mM DMPC, 100 mM DH6PC90% H2O/10% D2O0.15 M6.71 atm303Bruker AVANCE III 600
113D TROSY HNCO0.4 mM 15N, 13C, 85%2H Transmembrane domain of the common gamma-chain receptor, 40 mM DMPC, 100 mM DH6PC90% H2O/10% D2O0.15 M6.71 atm303Bruker AVANCE III 600
123D TROSY HNCO0.4 mM 15N, 13C, 85%2H Transmembrane domain of the Interleukin-9 receptor alpha subunit, 40 mM DMPC, 100 mM DH6PC90% H2O/10% D2O0.15 M6.71 atm303Bruker AVANCE III 600
133D TROSY HNCACO0.4 mM 15N, 13C, 85%2H Transmembrane domain of the common gamma-chain receptor, 40 mM DMPC, 100 mM DH6PC90% H2O/10% D2O0.15 M6.71 atm303Bruker AVANCE III 600
143D TROSY HNCACO0.4 mM 15N, 13C, 85%2H Transmembrane domain of the Interleukin-9 receptor alpha subunit, 40 mM DMPC, 100 mM DH6PC90% H2O/10% D2O0.15 M6.71 atm303Bruker AVANCE III 600
153D 1H-15N NOESY-TROSY0.4 mM 13C Transmembrane domain of the Interleukin-9 receptor alpha subunit, 0.4 mM 15N, 2H Transmembrane domain of the common gamma-chain receptor, 80 mM deuterated DMPC, 200 mM deuterated DH6PC90% H2O/10% D2O0.15 M6.71 atm303Bruker AVANCE III 800
163D 1H-15N NOESY-TROSY0.4 mM 13C Transmembrane domain of the common gamma-chain receptor, 0.4 mM 15N, 2H Transmembrane domain of the Interleukin-9 receptor alpha subunit, 80 mM deuterated DMPC, 200 mM deuterated DH6PC90% H2O/10% D2O0.15 M6.71 atm303Bruker AVANCE III 800
173D 1H-15N NOESY-TROSY0.4 mM 13C Transmembrane domain of the Interleukin-9 receptor alpha subunit, 0.4 mM 15N, 2H Transmembrane domain of the common gamma-chain receptor, 80 mM deuterated DMPC, 200 mM deuterated DH6PC90% H2O/10% D2O0.15 M6.71 atm303Bruker AVANCE III 800
183D 1H-13C NOESY0.4 mM 13C Transmembrane domain of the Interleukin-9 receptor alpha subunit, 0.4 mM 15N, 2H Transmembrane domain of the common gamma-chain receptor, 80 mM deuterated DMPC, 200 mM deuterated DH6PC90% H2O/10% D2O0.15 M6.71 atm303Bruker AVANCE III 800
193D 1H-13C NOESY0.4 mM 13C Transmembrane domain of the common gamma-chain receptor, 0.4 mM 15N, 2H Transmembrane domain of the Interleukin-9 receptor alpha subunit, 80 mM deuterated DMPC, 200 mM deuterated DH6PC90% H2O/10% D2O0.15 M6.71 atm303Bruker AVANCE III 800
203D 1H-13C NOESY0.4 mM 13C Transmembrane domain of the Interleukin-9 receptor alpha subunit, 0.4 mM 15N, 2H Transmembrane domain of the common gamma-chain receptor, 80 mM deuterated DMPC, 200 mM deuterated DH6PC90% H2O/10% D2O0.15 M6.71 atm303Bruker AVANCE III 800
212D Methyl-Amide Intermolecular NOESY0.4 mM 13C Transmembrane domain of the Interleukin-9 receptor alpha subunit, 0.4 mM 15N, 2H Transmembrane domain of the common gamma-chain receptor, 80 mM deuterated DMPC, 200 mM deuterated DH6PC90% H2O/10% D2O0.15 M6.71 atm303Bruker AVANCE NEO 700
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III600
2BrukerAVANCE NEO700
4BrukerAVANCE III800
NMR Refinement
MethodDetailsSoftware
simulated annealingX-PLOR NIH
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number15
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2chemical shift assignmentXEASYBartels et al.
4chemical shift calculationTALOS+Shen, Delaglio, Cornilescu, Bax
5refinementX-PLOR NIHSchwieters, Kuszewski, Tjandra and Clore