8DDD | pdb_00008ddd

Intramembrane recognition between transmembrane domains of IL-9R and common gamma chain

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N TROSY-HSQC	0.4 mM 15N, 13C, 85%2H Transmembrane domain of the common gamma-chain receptor, 40 mM DMPC, 100 mM DH6PC	90% H2O/10% D2O	0.15 M	6.7	1 atm	303	Bruker AVANCE III 600
2	2D 1H-15N TROSY-HSQC	0.4 mM 15N, 13C, 85%2H Transmembrane domain of the Interleukin-9 receptor alpha subunit, 40 mM DMPC, 100 mM DH6PC	90% H2O/10% D2O	0.15 M	6.7	1 atm	303	Bruker AVANCE III 600
3	2D 1H-15N TROSY-HSQC	0.4 mM 13C Transmembrane domain of the Interleukin-9 receptor alpha subunit, 0.4 mM 15N, 2H Transmembrane domain of the common gamma-chain receptor, 80 mM deuterated DMPC, 200 mM deuterated DH6PC	90% H2O/10% D2O	0.15 M	6.7	1 atm	303	Bruker AVANCE III 800
4	2D 1H-15N TROSY-HSQC	0.4 mM 13C Transmembrane domain of the common gamma-chain receptor, 0.4 mM 15N, 2H Transmembrane domain of the Interleukin-9 receptor alpha subunit, 80 mM deuterated DMPC, 200 mM deuterated DH6PC	90% H2O/10% D2O	0.15 M	6.7	1 atm	303	Bruker AVANCE III 800
5	2D 1H-13C HSQC	0.4 mM 13C Transmembrane domain of the Interleukin-9 receptor alpha subunit, 0.4 mM 15N, 2H Transmembrane domain of the common gamma-chain receptor, 80 mM deuterated DMPC, 200 mM deuterated DH6PC	90% H2O/10% D2O	0.15 M	6.7	1 atm	303	Bruker AVANCE III 800
6	2D 1H-13C HSQC	0.4 mM 13C Transmembrane domain of the common gamma-chain receptor, 0.4 mM 15N, 2H Transmembrane domain of the Interleukin-9 receptor alpha subunit, 80 mM deuterated DMPC, 200 mM deuterated DH6PC	90% H2O/10% D2O	0.15 M	6.7	1 atm	303	Bruker AVANCE III 800
7	3D TROSY HNCA	0.4 mM 15N, 13C, 85%2H Transmembrane domain of the common gamma-chain receptor, 40 mM DMPC, 100 mM DH6PC	90% H2O/10% D2O	0.15 M	6.7	1 atm	303	Bruker AVANCE III 600
8	3D TROSY HNCA	0.4 mM 15N, 13C, 85%2H Transmembrane domain of the Interleukin-9 receptor alpha subunit, 40 mM DMPC, 100 mM DH6PC	90% H2O/10% D2O	0.15 M	6.7	1 atm	303	Bruker AVANCE III 600
9	3D TROSY HN(CO)CA	0.4 mM 15N, 13C, 85%2H Transmembrane domain of the common gamma-chain receptor, 40 mM DMPC, 100 mM DH6PC	90% H2O/10% D2O	0.15 M	6.7	1 atm	303	Bruker AVANCE III 600
10	3D TROSY HN(CO)CA	0.4 mM 15N, 13C, 85%2H Transmembrane domain of the Interleukin-9 receptor alpha subunit, 40 mM DMPC, 100 mM DH6PC	90% H2O/10% D2O	0.15 M	6.7	1 atm	303	Bruker AVANCE III 600
11	3D TROSY HNCO	0.4 mM 15N, 13C, 85%2H Transmembrane domain of the common gamma-chain receptor, 40 mM DMPC, 100 mM DH6PC	90% H2O/10% D2O	0.15 M	6.7	1 atm	303	Bruker AVANCE III 600
12	3D TROSY HNCO	0.4 mM 15N, 13C, 85%2H Transmembrane domain of the Interleukin-9 receptor alpha subunit, 40 mM DMPC, 100 mM DH6PC	90% H2O/10% D2O	0.15 M	6.7	1 atm	303	Bruker AVANCE III 600
13	3D TROSY HNCACO	0.4 mM 15N, 13C, 85%2H Transmembrane domain of the common gamma-chain receptor, 40 mM DMPC, 100 mM DH6PC	90% H2O/10% D2O	0.15 M	6.7	1 atm	303	Bruker AVANCE III 600
14	3D TROSY HNCACO	0.4 mM 15N, 13C, 85%2H Transmembrane domain of the Interleukin-9 receptor alpha subunit, 40 mM DMPC, 100 mM DH6PC	90% H2O/10% D2O	0.15 M	6.7	1 atm	303	Bruker AVANCE III 600
15	3D 1H-15N NOESY-TROSY	0.4 mM 13C Transmembrane domain of the Interleukin-9 receptor alpha subunit, 0.4 mM 15N, 2H Transmembrane domain of the common gamma-chain receptor, 80 mM deuterated DMPC, 200 mM deuterated DH6PC	90% H2O/10% D2O	0.15 M	6.7	1 atm	303	Bruker AVANCE III 800
16	3D 1H-15N NOESY-TROSY	0.4 mM 13C Transmembrane domain of the common gamma-chain receptor, 0.4 mM 15N, 2H Transmembrane domain of the Interleukin-9 receptor alpha subunit, 80 mM deuterated DMPC, 200 mM deuterated DH6PC	90% H2O/10% D2O	0.15 M	6.7	1 atm	303	Bruker AVANCE III 800
17	3D 1H-15N NOESY-TROSY	0.4 mM 13C Transmembrane domain of the Interleukin-9 receptor alpha subunit, 0.4 mM 15N, 2H Transmembrane domain of the common gamma-chain receptor, 80 mM deuterated DMPC, 200 mM deuterated DH6PC	90% H2O/10% D2O	0.15 M	6.7	1 atm	303	Bruker AVANCE III 800
18	3D 1H-13C NOESY	0.4 mM 13C Transmembrane domain of the Interleukin-9 receptor alpha subunit, 0.4 mM 15N, 2H Transmembrane domain of the common gamma-chain receptor, 80 mM deuterated DMPC, 200 mM deuterated DH6PC	90% H2O/10% D2O	0.15 M	6.7	1 atm	303	Bruker AVANCE III 800
19	3D 1H-13C NOESY	0.4 mM 13C Transmembrane domain of the common gamma-chain receptor, 0.4 mM 15N, 2H Transmembrane domain of the Interleukin-9 receptor alpha subunit, 80 mM deuterated DMPC, 200 mM deuterated DH6PC	90% H2O/10% D2O	0.15 M	6.7	1 atm	303	Bruker AVANCE III 800
20	3D 1H-13C NOESY	0.4 mM 13C Transmembrane domain of the Interleukin-9 receptor alpha subunit, 0.4 mM 15N, 2H Transmembrane domain of the common gamma-chain receptor, 80 mM deuterated DMPC, 200 mM deuterated DH6PC	90% H2O/10% D2O	0.15 M	6.7	1 atm	303	Bruker AVANCE III 800
21	2D Methyl-Amide Intermolecular NOESY	0.4 mM 13C Transmembrane domain of the Interleukin-9 receptor alpha subunit, 0.4 mM 15N, 2H Transmembrane domain of the common gamma-chain receptor, 80 mM deuterated DMPC, 200 mM deuterated DH6PC	90% H2O/10% D2O	0.15 M	6.7	1 atm	303	Bruker AVANCE NEO 700

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III	600
2	Bruker	AVANCE NEO	700
4	Bruker	AVANCE III	800

NMR Refinement
Method	Details	Software
simulated annealing		X-PLOR NIH

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	15
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2	chemical shift assignment	XEASY		Bartels et al.
4	chemical shift calculation	TALOS+		Shen, Delaglio, Cornilescu, Bax
5	refinement	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore