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PI 3-kinase alpha with nanobody 3-126
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7MYN
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 4.2394 f_angle_d 0.6323 f_chiral_restr 0.0414 f_plane_restr 0.0036 f_bond_d 0.0031
Sample Human PI 3-kinase alpha complex composed of p110alpha and p85alpha with nanobody 3-126 bound
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 506412 Reported Resolution (Å) 2.41 Resolution Method DIFFRACTION PATTERN/LAYERLINES Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 (7MYN) Refinement Space REAL Refinement Protocol FLEXIBLE FIT Refinement Target Correlation coefficient Overall B Value 43.84 Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 70
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 1500 Maximum Defocus (nm) 2500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source OTHER Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version MODEL FITTING PHENIX 1.19.2-4158 MODEL REFINEMENT PHENIX 1.19.2-4158
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION