8D8S

SufS from Staphylococcus aureus

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	8.35	293	Tris, ammonium sulfate

Crystal Properties
Matthews coefficient	Solvent content
2.77	55.66

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 93.853	α = 90
b = 93.853	β = 90
c = 101.461	γ = 120

Symmetry
Space Group	P 32 2 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	Bruker PHOTON III	Helios MX	2021-11-16	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SEALED TUBE	BRUKER D8 QUEST	1.34

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.388	31.737	100	0.015	0.021	0.015	22.8	22.6		104403

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.388	1.41	97.6		0.415	0.587	0.415	2.1	1.9

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	5J8Q	1.388	31.737	104344	2054	99.863	0.168	0.1679	0.1911	17.802

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.098	-0.049		-0.098		0.317

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	32.996
r_dihedral_angle_4_deg	15.871
r_dihedral_angle_3_deg	11.757
r_dihedral_angle_1_deg	6.148
r_lrange_it	4.952
r_lrange_other	4.85
r_scangle_it	4.359
r_scangle_other	4.358
r_scbond_it	2.96
r_scbond_other	2.959
r_angle_refined_deg	2.054
r_angle_other_deg	2.023
r_mcangle_other	1.924
r_mcangle_it	1.92
r_mcbond_it	1.403
r_mcbond_other	1.392
r_nbd_refined	0.241
r_symmetry_nbd_other	0.188
r_symmetry_nbd_refined	0.186
r_symmetry_xyhbond_nbd_refined	0.186
r_nbtor_refined	0.177
r_nbd_other	0.151
r_xyhbond_nbd_refined	0.126
r_chiral_restr	0.1
r_symmetry_nbtor_other	0.085
r_xyhbond_nbd_other	0.078
r_bond_refined_d	0.016
r_gen_planes_refined	0.011
r_gen_planes_other	0.002
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	3272
Nucleic Acid Atoms
Solvent Atoms	369
Heterogen Atoms	12

Software

Software
Software Name	Purpose
REFMAC	refinement
APEX	data reduction
APEX	data scaling
PHASER	phasing