8D8H

Crystal structure of hen egg white lysozyme at 325 Kelvin (Triplicate)

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	4.6	295	1.2 M NaCl and 100 mM AcONa pH 4.6

Crystal Properties
Matthews coefficient	Solvent content
2.1	41.55

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 79.891	α = 90
b = 79.891	β = 90
c = 37.802	γ = 90

Symmetry
Space Group	P 43 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	325	CMOS	BRUKER PHOTON 100		2020-11-24	L	LAUE

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	ROTATING ANODE	BRUKER TURBO X-RAY SOURCE	1.54184

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.5	22.64	98.29	0.684	5.34	1.82		19827

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.5	22.64			0.684

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	3A8Z	1.5	22.637	19827	1013	98.295	0.215	0.2134	0.2409	26.389

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.003			0.003		-0.006

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	32.638
r_dihedral_angle_4_deg	24.477
r_dihedral_angle_3_deg	14.62
r_lrange_it	8.027
r_lrange_other	8.02
r_dihedral_angle_1_deg	6.739
r_scangle_it	6.383
r_scangle_other	6.379
r_scbond_it	4.084
r_scbond_other	4.08
r_mcangle_other	3.14
r_mcangle_it	3.134
r_mcbond_it	2.181
r_mcbond_other	2.16
r_angle_refined_deg	1.719
r_angle_other_deg	1.517
r_nbd_refined	0.229
r_symmetry_nbd_other	0.198
r_symmetry_xyhbond_nbd_refined	0.18
r_nbtor_refined	0.17
r_nbd_other	0.144
r_xyhbond_nbd_refined	0.142
r_chiral_restr	0.092
r_metal_ion_refined	0.086
r_symmetry_nbtor_other	0.082
r_symmetry_nbd_refined	0.056
r_bond_refined_d	0.012
r_gen_planes_refined	0.01
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1001
Nucleic Acid Atoms
Solvent Atoms	27
Heterogen Atoms	20

Software

Software
Software Name	Purpose
REFMAC	refinement
SAINT	data reduction