8CVX
Human glycogenin-1 and glycogen synthase-1 complex in the presence of glucose-6-phosphate
ELECTRON MICROSCOPY
Refinement
| RMS Deviations | |
|---|---|
| Key | Refinement Restraint Deviation |
| r_dihedral_angle_2_deg | 32.697 |
| r_dihedral_angle_3_deg | 18.588 |
| r_long_range_B_refined | 13.748 |
| r_dihedral_angle_4_deg | 10.606 |
| r_dihedral_angle_1_deg | 5.072 |
| r_mcangle_it | 2.694 |
| r_mcbond_it | 1.421 |
| r_angle_refined_deg | 1.101 |
| r_scbond_it | 0.665 |
| r_chiral_restr | 0.097 |
| Sample |
|---|
| Human glycogenin-1 and glycogen synthase-1 complex in the presence of glucose-6-phosphate |
| Specimen Preparation | |
|---|---|
| Sample Aggregation State | PARTICLE |
| Vitrification Instrument | FEI VITROBOT MARK IV |
| Cryogen Name | ETHANE |
| Sample Vitrification Details | 9 sec blotting time, 15 blot force |
| 3D Reconstruction | |
|---|---|
| Reconstruction Method | SINGLE PARTICLE |
| Number of Particles | 451737 |
| Reported Resolution (Å) | 3.5 |
| Resolution Method | FSC 0.143 CUT-OFF |
| Other Details | |
| Refinement Type | |
| Symmetry Type | POINT |
| Point Symmetry | C1 |
| Map-Model Fitting and Refinement | |||||
|---|---|---|---|---|---|
| Id | 1 | ||||
| Refinement Space | RECIPROCAL | ||||
| Refinement Protocol | FLEXIBLE FIT | ||||
| Refinement Target | |||||
| Overall B Value | |||||
| Fitting Procedure | |||||
| Details | |||||
| Data Acquisition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Detector Type | FEI FALCON IV (4k x 4k) | ||||||||
| Electron Dose (electrons/Å**2) | 45 | ||||||||
| Imaging Experiment | 1 |
|---|---|
| Date of Experiment | |
| Temperature (Kelvin) | |
| Microscope Model | TFS GLACIOS |
| Minimum Defocus (nm) | 700 |
| Maximum Defocus (nm) | 2200 |
| Minimum Tilt Angle (degrees) | |
| Maximum Tilt Angle (degrees) | |
| Nominal CS | 2.7 |
| Imaging Mode | BRIGHT FIELD |
| Specimen Holder Model | |
| Nominal Magnification | |
| Calibrated Magnification | |
| Source | FIELD EMISSION GUN |
| Acceleration Voltage (kV) | 200 |
| Imaging Details |
| EM Software | ||
|---|---|---|
| Task | Software Package | Version |
| IMAGE ACQUISITION | EPU | |
| CTF CORRECTION | cryoSPARC | v3.3.2 |
| MODEL FITTING | MOLREP | |
| MODEL REFINEMENT | REFMAC | |
| INITIAL EULER ASSIGNMENT | cryoSPARC | v3.3.2 |
| FINAL EULER ASSIGNMENT | cryoSPARC | v3.3.2 |
| CLASSIFICATION | cryoSPARC | v3.3.2 |
| RECONSTRUCTION | cryoSPARC | v3.3.2 |
| Image Processing | ||||
|---|---|---|---|---|
| CTF Correction Type | CTF Correction Details | Number of Particles Selected | Particle Selection Details | |
| PHASE FLIPPING AND AMPLITUDE CORRECTION | CTF correction was performed in batch in early steps. CTF correction was performed on per particle bases in the last iterations | 1383196 | ||
