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Solution structure of Zipcode binding protein 1 (ZBP1) KH3(DD)KH4 domains in complex with N6-Methyladenosine containing RNA
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 300 uM [U-100% 13C; U-100% 15N] sample 1 95% H2O/5% D2O 0.02 6.5 ambient atm 310 Bruker 950 Avance 950 2 2D 1H-13C HSQC 300 uM [U-100% 13C; U-100% 15N] sample 1 95% H2O/5% D2O 0.02 6.5 ambient atm 310 Bruker 950 Avance 950 3 3D 1H-13C NOESY aliphatic 300 uM [U-100% 13C; U-100% 15N] sample 1 95% H2O/5% D2O 0.02 6.5 ambient atm 310 Bruker 950 Avance 950 4 3D 1H-15N NOESY 300 uM [U-100% 13C; U-100% 15N] sample 1 95% H2O/5% D2O 0.02 6.5 ambient atm 310 Bruker 950 Avance 950 5 2D 1H-1H NOESY 300 uM [U-100% 13C; U-100% 15N] sample 1 95% H2O/5% D2O 0.02 6.5 ambient atm 310 Bruker 800 Avance 800 6 2D 1H-1H NOESY 300 uM [U-100% 13C; U-100% 15N] sample 1 95% H2O/5% D2O 0.02 6.5 ambient atm 310 Bruker 700 Avance 700
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker 950 Avance 950 2 Bruker 800 Avance 800 3 Bruker 700 Avance 700
NMR Refinement Method Details Software torsion angle dynamics ARIA
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 40 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement ARIA Linge, O'Donoghue and Nilges 2 structure calculation ARIA Linge, O'Donoghue and Nilges 3 chemical shift assignment XEASY Bartels et al. 4 peak picking XEASY Bartels et al.