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Crystal structure of an 8-repeat consensus TPR superhelix with in Hepes with Ca
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2FO7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 292 20mM CaCl2
100 mM Hepes
30% MPD
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.317 α = 90 b = 68.317 β = 90 c = 72.335 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2019-10-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.97926 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 59.17 100 0.087 0.022 0.999 11 15 48472
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.3 1.37 100 2.322 0.605 0.438 14.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.3 59.16 45944 2472 99.95 0.18741 0.1868 0.19866 0.2316 RANDOM 25.941
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.93 r_dihedral_angle_3_deg 13.818 r_dihedral_angle_4_deg 11.403 r_long_range_B_other 6.76 r_long_range_B_refined 6.758 r_scangle_other 5.586 r_dihedral_angle_1_deg 4.636 r_scbond_it 3.688 r_scbond_other 3.685 r_mcangle_other 2.69
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.93 r_dihedral_angle_3_deg 13.818 r_dihedral_angle_4_deg 11.403 r_long_range_B_other 6.76 r_long_range_B_refined 6.758 r_scangle_other 5.586 r_dihedral_angle_1_deg 4.636 r_scbond_it 3.688 r_scbond_other 3.685 r_mcangle_other 2.69 r_mcangle_it 2.679 r_mcbond_it 1.883 r_mcbond_other 1.863 r_angle_refined_deg 1.758 r_angle_other_deg 1.652 r_chiral_restr 0.103 r_bond_refined_d 0.012 r_gen_planes_refined 0.012 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1148 Nucleic Acid Atoms Solvent Atoms 94 Heterogen Atoms 22
Software Software Software Name Purpose REFMAC refinement SCALA data scaling MOSFLM data reduction MOLREP phasing