8CHR

The FK1 domain of FKBP51 in complex with (1S,5S,6R)-10-((R)-(3,5-dichlorophenyl)sulfonimidoyl)-3-(pyridin-2-ylmethyl)-5-vinyl-3,10-diazabicyclo[4.3.1]decan-2-one


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP29332% PEG3350, 0.2 M ammonium acetate, 0.1M HEPES-NaOH pH 7.5
Crystal Properties
Matthews coefficientSolvent content
2.2846.15

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 42.128α = 90
b = 54.222β = 90
c = 56.011γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 S 6M2022-09-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.10.918400BESSY14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.142.131000.0470.0550.0281167.152812
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.11.121.1041.2890.6560.6327.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.138.98852743265599.9280.1610.15940.192313.353
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.745-0.154-0.591
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg18.94
r_dihedral_angle_3_deg11.983
r_dihedral_angle_1_deg7.817
r_rigid_bond_restr5.101
r_dihedral_angle_2_deg4.939
r_lrange_it3.922
r_lrange_other2.605
r_chiral_restr_other2.158
r_scangle_it1.985
r_scangle_other1.984
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg18.94
r_dihedral_angle_3_deg11.983
r_dihedral_angle_1_deg7.817
r_rigid_bond_restr5.101
r_dihedral_angle_2_deg4.939
r_lrange_it3.922
r_lrange_other2.605
r_chiral_restr_other2.158
r_scangle_it1.985
r_scangle_other1.984
r_angle_refined_deg1.893
r_scbond_it1.463
r_scbond_other1.462
r_mcangle_it1.446
r_mcangle_other1.445
r_mcbond_it1.142
r_mcbond_other1.141
r_angle_other_deg0.901
r_symmetry_xyhbond_nbd_refined0.3
r_nbd_other0.239
r_nbd_refined0.219
r_symmetry_nbd_refined0.216
r_symmetry_nbd_other0.194
r_nbtor_refined0.183
r_xyhbond_nbd_refined0.154
r_chiral_restr0.144
r_symmetry_nbtor_other0.083
r_bond_refined_d0.014
r_gen_planes_refined0.012
r_bond_other_d0.004
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms956
Nucleic Acid Atoms
Solvent Atoms190
Heterogen Atoms31

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing