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The FK1 domain of FKBP51 in complex with (1S,5S,6R)-10-((S)-(3,5-dichlorophenyl)sulfinyl)-3-(pyridin-2-ylmethyl)-5-vinyl-3,10-diazabicyclo[4.3.1]decan-2-one
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5OBK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 32% PEG3350, 0.2 M ammonium acetate, 0.1M HEPES-NaOH pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.32 46.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.306 α = 90 b = 54.452 β = 90 c = 56.405 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2022-09-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1 42.31 100 0.031 0.037 0.019 1 26.3 7 71074
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1 1.02 0.363 0.43 0.226 0.923 6.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1 28.761 71000 3442 99.931 0.176 0.1751 0.1743 0.1871 0.1869 9.241
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.012 0.091 -0.103
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.631 r_dihedral_angle_3_deg 11.403 r_dihedral_angle_1_deg 7.495 r_dihedral_angle_2_deg 5.681 r_lrange_it 5.183 r_lrange_other 4.845 r_scangle_it 2.472 r_scangle_other 2.47 r_chiral_restr_other 2.145 r_angle_refined_deg 1.903
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.631 r_dihedral_angle_3_deg 11.403 r_dihedral_angle_1_deg 7.495 r_dihedral_angle_2_deg 5.681 r_lrange_it 5.183 r_lrange_other 4.845 r_scangle_it 2.472 r_scangle_other 2.47 r_chiral_restr_other 2.145 r_angle_refined_deg 1.903 r_scbond_it 1.632 r_scbond_other 1.631 r_mcangle_it 1.31 r_mcangle_other 1.309 r_mcbond_it 0.912 r_mcbond_other 0.91 r_angle_other_deg 0.869 r_symmetry_xyhbond_nbd_refined 0.235 r_xyhbond_nbd_refined 0.23 r_nbd_refined 0.201 r_symmetry_nbd_other 0.198 r_nbtor_refined 0.184 r_nbd_other 0.165 r_symmetry_nbd_refined 0.145 r_chiral_restr 0.134 r_symmetry_nbtor_other 0.084 r_bond_refined_d 0.014 r_gen_planes_refined 0.011 r_bond_other_d 0.004 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 961 Nucleic Acid Atoms Solvent Atoms 206 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing