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The FK1 domain of FKBP51 in complex with (1S,5S,6R)-10-((S)-(3,5-dichlorophenyl)sulfonimidoyl)-3-(pyridin-2-ylmethyl)-5-vinyl-3,10-diazabicyclo[4.3.1]decan-2-one
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5OBK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 32% PEG3350, 0.2 M ammonium acetate, 0.1M HEPES-NaOH pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.28 46.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.22 α = 90 b = 54.047 β = 90 c = 56.085 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2022-09-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.99 42.22 99.8 0.037 0.043 0.022 0.999 18 6.9 71936
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 0.99 1.01 0.852 1.003 0.524 0.683 6.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 0.99 38.948 71869 3489 99.671 0.19 0.1892 0.188 0.1967 0.1942 12.045
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.17 -0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.217 r_dihedral_angle_3_deg 13.366 r_dihedral_angle_1_deg 7.66 r_dihedral_angle_2_deg 5.251 r_lrange_it 4.344 r_lrange_other 4.033 r_scangle_it 2.309 r_scangle_other 2.308 r_angle_refined_deg 1.884 r_scbond_it 1.618
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.217 r_dihedral_angle_3_deg 13.366 r_dihedral_angle_1_deg 7.66 r_dihedral_angle_2_deg 5.251 r_lrange_it 4.344 r_lrange_other 4.033 r_scangle_it 2.309 r_scangle_other 2.308 r_angle_refined_deg 1.884 r_scbond_it 1.618 r_scbond_other 1.616 r_chiral_restr_other 1.55 r_mcangle_it 1.416 r_mcangle_other 1.415 r_mcbond_it 1.007 r_mcbond_other 1.007 r_angle_other_deg 0.719 r_symmetry_xyhbond_nbd_refined 0.314 r_nbd_refined 0.213 r_nbd_other 0.213 r_symmetry_nbd_other 0.194 r_symmetry_nbd_refined 0.192 r_nbtor_refined 0.182 r_xyhbond_nbd_refined 0.139 r_chiral_restr 0.136 r_symmetry_nbtor_other 0.084 r_gen_planes_refined 0.015 r_bond_refined_d 0.014 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 961 Nucleic Acid Atoms Solvent Atoms 174 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing