8CHM

Human FKBP12 in complex with (1S,5S,6R)-10-((S)-(3,5-dichlorophenyl)sulfinyl)-3-(pyridin-2-ylmethyl)-5-vinyl-3,10-diazabicyclo[4.3.1]decan-2-one

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		293	2.1 M ammonium sulfate, 0.2 M cadmium chloride, 0.1M HEPES-NaOH pH 7.5

Crystal Properties
Matthews coefficient	Solvent content
2.75	55.26

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 35.592	α = 90
b = 40.081	β = 90
c = 91.212	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS3 S 6M		2022-09-10	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	BESSY BEAMLINE 14.1	0.918400	BESSY	14.1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.12	45.648	99.7	0.026	0.03	0.015	0.999	30.7	7		50936

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.12	1.14			0.096	0.111	0.056	0.996		7.2

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.12	45.648	50866	2537	99.626	0.131	0.13	0.1455	10.321

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
1.555			-0.7		-0.855

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	17.161
r_dihedral_angle_3_deg	13.306
r_dihedral_angle_1_deg	7.059
r_rigid_bond_restr	5.011
r_dihedral_angle_2_deg	4.006
r_lrange_it	2.808
r_chiral_restr_other	2.231
r_lrange_other	2.107
r_angle_refined_deg	1.878
r_scangle_it	1.659
r_scangle_other	1.645
r_scbond_it	1.337
r_scbond_other	1.329
r_mcangle_it	0.873
r_mcangle_other	0.872
r_angle_other_deg	0.864
r_mcbond_it	0.687
r_mcbond_other	0.687
r_symmetry_xyhbond_nbd_refined	0.335
r_xyhbond_nbd_refined	0.275
r_symmetry_nbd_refined	0.253
r_nbd_refined	0.235
r_symmetry_nbd_other	0.203
r_nbtor_refined	0.179
r_nbd_other	0.176
r_chiral_restr	0.165
r_metal_ion_refined	0.154
r_symmetry_metal_ion_refined	0.099
r_symmetry_nbtor_other	0.089
r_bond_refined_d	0.017
r_gen_planes_refined	0.009
r_bond_other_d	0.006
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	814
Nucleic Acid Atoms
Solvent Atoms	214
Heterogen Atoms	47

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing