SH3 domain solved by the exact solid-state method from the Bruker Dynamics Center using the correction method for spin-diffusion with PDB 2NUZ as reference
SOLID-STATE NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 3D S2B pulse sequence with MOCCA-mixing between carbons | 1 na [U-100% 13C; U-100% 15N] SH3 of chicken alpha-spectrin | 100% H2O | 0 M | 7 | 1 atm | 298 | Bruker AVANCE NEO 700 |
| 2 | 5D S2B combined with a simultaneous 4D HCCH | 1 na [U-100% 13C; U-100% 15N] SH3 of chicken alpha-spectrin | 100% H2O | 0 M | 7 | 1 atm | 298 | Bruker AVANCE NEO 700 |
| 3 | 15 time-shared 15N/13C-edited H-RFDR-h(N/C)H RFDR pulse sequence with 1H-1H homonuclear mixing times from 150 us to 1.9 ms | 1 na [U-100% 13C; U-100% 15N] SH3 of chicken alpha-spectrin | 100% H2O | 0 M | 7 | 1 atm | 298 | Bruker AVANCE NEO 800 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE NEO | 800 |
| 2 | Bruker | AVANCE NEO | 700 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | Water refinement of the 10 lowest energy structures | ARIA |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 10 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | ARIA | 2.3 | Linge, O'Donoghue and Nilges |
| 2 | chemical shift assignment | CcpNmr Analysis | 2.5.2 | Wim F. Vranken, Wayne Boucher, Tim J. Stevens, Rasmus H. Fogh, Anne Pajon, Miguel Llinas, Eldon L. Ulrich, John L. Markley, John Ionides, Ernest D. Laue |
| 3 | structure calculation | ARIA | 2.3 | Linge, O'Donoghue and Nilges |
| 4 | peak picking | CcpNmr Analysis | 2.5.2 | Wim F. Vranken, Wayne Boucher, Tim J. Stevens, Rasmus H. Fogh, Anne Pajon, Miguel Llinas, Eldon L. Ulrich, John L. Markley, John Ionides, Ernest D. Laue |
