Find PDB structures and Computed Structure Models (CSM) by combining queries from tools in this suite: Attribute Search, Sequence Similarity, Sequence Motif, 3D Similarity, and 3D Motif with 'AND' logic.
SH3 domain solved by the exact solid-state method from the Bruker Dynamics Center using the correction method for spin-diffusion with PDB 2NUZ as reference
SOLID-STATE NMR
NMR Experiment
Experiment
Type
Sample Contents
Solvent
Ionic Strength
pH
Pressure
Temperature (K)
Spectrometer
1
3D S2B pulse sequence with MOCCA-mixing between carbons
1 na [U-100% 13C; U-100% 15N] SH3 of chicken alpha-spectrin
100% H2O
0 M
7
1 atm
298
Bruker AVANCE NEO 700
2
5D S2B combined with a simultaneous 4D HCCH
1 na [U-100% 13C; U-100% 15N] SH3 of chicken alpha-spectrin
100% H2O
0 M
7
1 atm
298
Bruker AVANCE NEO 700
3
15 time-shared 15N/13C-edited H-RFDR-h(N/C)H RFDR pulse sequence with 1H-1H homonuclear mixing times from 150 us to 1.9 ms
1 na [U-100% 13C; U-100% 15N] SH3 of chicken alpha-spectrin
100% H2O
0 M
7
1 atm
298
Bruker AVANCE NEO 800
NMR Spectrometer Information
Spectrometer
Manufacturer
Model
Field Strength
1
Bruker
AVANCE NEO
800
2
Bruker
AVANCE NEO
700
NMR Refinement
Method
Details
Software
simulated annealing
Water refinement of the 10 lowest energy structures
ARIA
NMR Ensemble Information
Conformer Selection Criteria
structures with the lowest energy
Conformers Calculated Total Number
100
Conformers Submitted Total Number
10
Representative Model
1 (lowest energy)
Computation: NMR Software
#
Classification
Version
Software Name
Author
1
refinement
ARIA
2.3
Linge, O'Donoghue and Nilges
2
chemical shift assignment
CcpNmr Analysis
2.5.2
Wim F. Vranken, Wayne Boucher, Tim J. Stevens, Rasmus H. Fogh, Anne Pajon, Miguel Llinas, Eldon L. Ulrich, John L. Markley, John Ionides, Ernest D. Laue
3
structure calculation
ARIA
2.3
Linge, O'Donoghue and Nilges
4
peak picking
CcpNmr Analysis
2.5.2
Wim F. Vranken, Wayne Boucher, Tim J. Stevens, Rasmus H. Fogh, Anne Pajon, Miguel Llinas, Eldon L. Ulrich, John L. Markley, John Ionides, Ernest D. Laue