8CGK

Lincomycin and Avilamycin bound to the 50S subunit


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg12.236
r_long_range_B_refined7.45
r_long_range_B_other7.42
r_dihedral_angle_2_deg6.72
r_dihedral_angle_1_deg6.396
r_scangle_other3.706
r_mcangle_it3.452
r_mcangle_other3.452
r_scbond_it2.169
r_scbond_other2.158
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg12.236
r_long_range_B_refined7.45
r_long_range_B_other7.42
r_dihedral_angle_2_deg6.72
r_dihedral_angle_1_deg6.396
r_scangle_other3.706
r_mcangle_it3.452
r_mcangle_other3.452
r_scbond_it2.169
r_scbond_other2.158
r_mcbond_it1.986
r_mcbond_other1.986
r_angle_refined_deg1.244
r_angle_other_deg0.492
r_chiral_restr0.049
r_gen_planes_refined0.01
r_bond_refined_d0.006
r_gen_planes_other0.002
r_bond_other_d0.001
r_dihedral_angle_4_deg
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Sample
70S ribosomes with antibiotic cocktail
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification Instrument
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles419159
Reported Resolution (Å)1.64
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypePOINT
Map-Model Fitting and Refinement
Id1
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeFEI FALCON IV (4k x 4k)
Electron Dose (electrons/Å**2)60
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelFEI TITAN KRIOS
Minimum Defocus (nm)400
Maximum Defocus (nm)1000
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
MODEL REFINEMENTREFMAC5.8.0415
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION