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human carbonic anhydrase I complexed with 4-(3-butylureido)benzenesulfonamide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1JV0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 296 28-31% PEG4000, 0.2 M Sodium acetate, 0.1 M Tris pH 8.5-9.0
Crystal Properties Matthews coefficient Solvent content 2.34 47.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.24 α = 90 b = 71.51 β = 90 c = 121.76 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2022-03-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 11.2C 1.0 ELETTRA 11.2C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.44 46.992 97.3 0.056 0.059 0.999 19.49 11.6 97034
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.44 1.47 95.8 0.828 2.15 12.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT NONE 1.44 46.992 97034 4738 97.307 0.137 0.1345 0.1352 0.1802 0.1806 27.561
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.324 0.681 -0.357
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.44 r_dihedral_angle_4_deg 19.671 r_dihedral_angle_3_deg 12.984 r_dihedral_angle_1_deg 7.238 r_rigid_bond_restr 5.701 r_scangle_it 5.663 r_scangle_other 5.662 r_scbond_it 5.417 r_scbond_other 5.416 r_lrange_other 5.416
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.44 r_dihedral_angle_4_deg 19.671 r_dihedral_angle_3_deg 12.984 r_dihedral_angle_1_deg 7.238 r_rigid_bond_restr 5.701 r_scangle_it 5.663 r_scangle_other 5.662 r_scbond_it 5.417 r_scbond_other 5.416 r_lrange_other 5.416 r_lrange_it 5.414 r_mcangle_it 4.081 r_mcangle_other 4.081 r_mcbond_it 3.682 r_mcbond_other 3.681 r_angle_refined_deg 1.926 r_angle_other_deg 1.526 r_nbd_other 0.236 r_nbd_refined 0.208 r_symmetry_nbd_other 0.193 r_symmetry_xyhbond_nbd_refined 0.177 r_nbtor_refined 0.172 r_symmetry_nbd_refined 0.157 r_xyhbond_nbd_refined 0.133 r_chiral_restr 0.11 r_symmetry_nbtor_other 0.088 r_metal_ion_refined 0.071 r_bond_refined_d 0.015 r_gen_planes_refined 0.013 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4032 Nucleic Acid Atoms Solvent Atoms 477 Heterogen Atoms 42
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling REFMAC phasing