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The Fk1 domain of FKBP51 in complex with 2-(3-((R)-1-(((S)-1-((S)-2-(5-chlorothiophen-2-yl)butanoyl)piperidine-2-carbonyl)oxy)-3-(3,4-dimethoxyphenyl)propyl)phenoxy)acetic acid
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 22% PEG3350, 0.1 M HEPES pH 7.5, 0.2 M ammonium acetate
Crystal Properties Matthews coefficient Solvent content 2.29 46.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.392 α = 90 b = 48.342 β = 90 c = 57.276 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2021-12-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 46.39 98.3 0.049 0.059 0.031 1 16.8 6.3 25513
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.42 1.461 1.75 0.948 0.736 6.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4TW7 1.4 36.97 25469 1276 97.928 0.199 0.1977 0.1946 0.2337 0.2289 22.432
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.652 -2.895 -1.757
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 19.188 r_dihedral_angle_3_deg 12.999 r_dihedral_angle_1_deg 8.032 r_lrange_it 6.086 r_lrange_other 6.028 r_dihedral_angle_2_deg 4.246 r_scangle_it 3.158 r_scangle_other 3.156 r_scbond_it 2.079 r_scbond_other 2.078
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 19.188 r_dihedral_angle_3_deg 12.999 r_dihedral_angle_1_deg 8.032 r_lrange_it 6.086 r_lrange_other 6.028 r_dihedral_angle_2_deg 4.246 r_scangle_it 3.158 r_scangle_other 3.156 r_scbond_it 2.079 r_scbond_other 2.078 r_mcangle_it 2.023 r_mcangle_other 2.021 r_angle_refined_deg 2.001 r_mcbond_it 1.371 r_mcbond_other 1.371 r_angle_other_deg 0.737 r_chiral_restr_other 0.692 r_symmetry_xyhbond_nbd_refined 0.313 r_nbd_refined 0.209 r_symmetry_nbd_other 0.194 r_xyhbond_nbd_refined 0.189 r_nbtor_refined 0.184 r_symmetry_nbd_refined 0.132 r_nbd_other 0.131 r_chiral_restr 0.094 r_symmetry_nbtor_other 0.086 r_bond_refined_d 0.013 r_gen_planes_refined 0.013 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 923 Nucleic Acid Atoms Solvent Atoms 97 Heterogen Atoms 50
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing