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The Fk1 domain of FKBP51 in complex with 2-(3-((R)-1-(((S)-1-((S)-2-(5-chlorothiophen-2-yl)-2-(3,4,5-trimethoxyphenyl)acetyl)piperidine-2-carbonyl)oxy)-3-(3,4-dimethoxyphenyl)propyl)phenoxy)acetic acid
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 20% PEG3350, 0.1 M HEPES pH 7.5, 0.2 M ammonium acetate
Crystal Properties Matthews coefficient Solvent content 2.24 45.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.556 α = 90 b = 48.123 β = 90 c = 57.156 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2021-12-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 45.56 99.9 0.078 0.093 0.05 0.999 12.8 6.1 7751
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.16 0.74 0.875 0.462 0.871 6.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4TW7 2.1 33.105 7720 384 99.78 0.228 0.2253 0.2241 0.2722 0.2717 45.756
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 7.634 -3.437 -4.197
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 18.498 r_dihedral_angle_3_deg 16.037 r_dihedral_angle_1_deg 8.912 r_dihedral_angle_2_deg 7.86 r_lrange_it 6.205 r_lrange_other 6.203 r_mcangle_it 4.699 r_mcangle_other 4.695 r_scangle_it 4.456 r_scangle_other 4.453
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 18.498 r_dihedral_angle_3_deg 16.037 r_dihedral_angle_1_deg 8.912 r_dihedral_angle_2_deg 7.86 r_lrange_it 6.205 r_lrange_other 6.203 r_mcangle_it 4.699 r_mcangle_other 4.695 r_scangle_it 4.456 r_scangle_other 4.453 r_mcbond_other 3.082 r_mcbond_it 3.08 r_scbond_it 2.921 r_scbond_other 2.918 r_angle_refined_deg 1.825 r_chiral_restr_other 1.524 r_angle_other_deg 0.889 r_nbd_refined 0.236 r_symmetry_nbd_other 0.207 r_nbtor_refined 0.191 r_xyhbond_nbd_refined 0.179 r_nbd_other 0.163 r_symmetry_xyhbond_nbd_refined 0.103 r_symmetry_nbd_refined 0.093 r_symmetry_nbtor_other 0.088 r_chiral_restr 0.07 r_bond_refined_d 0.011 r_gen_planes_refined 0.008 r_bond_other_d 0.005 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 929 Nucleic Acid Atoms Solvent Atoms 7 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing