☰ Navigation Tabs
Tagless BtuM in complex with cyanocobalamin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6FFV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 277 0.2 M Potassium chloride, 0.1 M Sodium citrate pH 5.5, 37 % v/v Pentaerythritol propoxylate (PO/OH).
Crystal Properties Matthews coefficient Solvent content 2.14 42.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.318 α = 90 b = 91.318 β = 90 c = 77.391 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2020-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.976 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.528 79.084 99.9 0.98 10.4 2.21 6814 49.73
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.53 2.63 2.8 0.53 1.5 0.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3 79.084 6264 295 80.69 0.227 0.2249 0.2229 0.2629 0.2609 81.507
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.088 -0.544 -1.088 3.531
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 18.139 r_dihedral_angle_2_deg 15.511 r_dihedral_angle_6_deg 15.396 r_dihedral_angle_1_deg 6.811 r_angle_refined_deg 2.019 r_nbtor_refined 0.331 r_symmetry_nbd_refined 0.287 r_nbd_refined 0.256 r_xyhbond_nbd_refined 0.152 r_chiral_restr 0.114
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 18.139 r_dihedral_angle_2_deg 15.511 r_dihedral_angle_6_deg 15.396 r_dihedral_angle_1_deg 6.811 r_angle_refined_deg 2.019 r_nbtor_refined 0.331 r_symmetry_nbd_refined 0.287 r_nbd_refined 0.256 r_xyhbond_nbd_refined 0.152 r_chiral_restr 0.114 r_bond_refined_d 0.012 r_gen_planes_refined 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1378 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 91
Software Software Software Name Purpose REFMAC refinement PHASER phasing Coot model building XDS data reduction XDS data scaling