8C2H

Transmembrane domain of active state homomeric GluA1 AMPA receptor in tandem with TARP gamma 3


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_long_range_B_refined21.222
r_long_range_B_other21.222
r_dihedral_angle_3_deg17.135
r_scangle_other12.84
r_mcangle_it10.877
r_mcangle_other10.876
r_scbond_it7.723
r_scbond_other7.722
r_mcbond_it6.703
r_mcbond_other6.703
RMS Deviations
KeyRefinement Restraint Deviation
r_long_range_B_refined21.222
r_long_range_B_other21.222
r_dihedral_angle_3_deg17.135
r_scangle_other12.84
r_mcangle_it10.877
r_mcangle_other10.876
r_scbond_it7.723
r_scbond_other7.722
r_mcbond_it6.703
r_mcbond_other6.703
r_dihedral_angle_2_deg6.038
r_dihedral_angle_1_deg5.838
r_angle_refined_deg1.462
r_angle_other_deg0.558
r_chiral_restr0.08
r_gen_planes_refined0.007
r_bond_refined_d0.006
r_gen_planes_other0.003
r_bond_other_d0.002
r_dihedral_angle_4_deg
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Sample
Homomeric GluA1 AMPA receptor in complex with TARP gamma 3
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification Instrument
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles247485
Reported Resolution (Å)2.64
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypePOINT
Point SymmetryC1
Map-Model Fitting and Refinement
Id1
Refinement SpaceRECIPROCAL
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
DetailsServalcat
Data Acquisition
Detector TypeGATAN K3 BIOQUANTUM (6k x 4k)
Electron Dose (electrons/Å**2)50
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelTFS KRIOS
Minimum Defocus (nm)1400
Maximum Defocus (nm)1400
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
MODEL REFINEMENTREFMAC
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION