8C2E

Structure of 14-3-3 sigma delta C with electrophilic peptide 4IEA-5


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2770.095 M HEPES pH 7.7, 24% (v/v) PEG400 0.19 M CaCl2, 5% (v/v) Glycerol
Crystal Properties
Matthews coefficientSolvent content
2.6854.02

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 82.513α = 90
b = 111.724β = 90
c = 63.077γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2022-06-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPETRA III, DESY BEAMLINE P111.03322PETRA III, DESYP11

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.255.9299.70.99112.112.815133
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.22.270.895

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.255.921439372799.570.177570.17540.22067RANDOM17.205
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.69-0.020.72
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.894
r_dihedral_angle_2_deg7.642
r_long_range_B_refined6.833
r_long_range_B_other6.716
r_scangle_other5.323
r_dihedral_angle_1_deg5.164
r_mcangle_it3.311
r_mcangle_other3.311
r_scbond_it3.236
r_scbond_other3.234
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.894
r_dihedral_angle_2_deg7.642
r_long_range_B_refined6.833
r_long_range_B_other6.716
r_scangle_other5.323
r_dihedral_angle_1_deg5.164
r_mcangle_it3.311
r_mcangle_other3.311
r_scbond_it3.236
r_scbond_other3.234
r_mcbond_it2.075
r_mcbond_other2.075
r_angle_refined_deg1.515
r_angle_other_deg0.489
r_chiral_restr0.072
r_bond_refined_d0.009
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
r_dihedral_angle_4_deg
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1846
Nucleic Acid Atoms
Solvent Atoms110
Heterogen Atoms4

Software

Software
Software NamePurpose
REFMACrefinement
DIALSdata reduction
Aimlessdata scaling
MOLREPphasing
Cootmodel building