8C18 | pdb_00008c18

Solution structure of carotenoid-binding protein AstaPo1 in complex with astaxanthin


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D HNCA150 mM sodium chloride, 50 mM TRIS, 0.02 % w/v sodium azide, 250 uM [U-100% 13C; U-100% 15N] AstaPo1, 250 uM Astaxanthin95% H2O/5% D2O200 mM7.01 atm298Bruker AVANCE III 800
152D 1H-13C HSQC aliphatic150 mM sodium chloride, 50 mM TRIS, 0.02 % w/v sodium azide, 250 uM [U-100% 13C; U-100% 15N] AstaPo1, 250 uM Astaxanthin95% H2O/5% D2O200 mM7.01 atm298Bruker AVANCE III 800
162D 1H-15N HSQC150 mM sodium chloride, 50 mM TRIS, 0.02 % w/v sodium azide, 250 uM [U-100% 13C; U-100% 15N] AstaPo1, 250 uM Astaxanthin95% H2O/5% D2O200 mM7.01 atm298Bruker AVANCE III 800
172D 1H-13C HSQC aromatic150 mM sodium chloride, 50 mM TRIS, 0.02 % w/v sodium azide, 250 uM [U-100% 13C; U-100% 15N] AstaPo1, 250 uM Astaxanthin95% H2O/5% D2O200 mM7.01 atm298Bruker AVANCE III 800
23D HN(CO)CA150 mM sodium chloride, 50 mM TRIS, 0.02 % w/v sodium azide, 250 uM [U-100% 13C; U-100% 15N] AstaPo1, 250 uM Astaxanthin95% H2O/5% D2O200 mM7.01 atm298Bruker AVANCE III 800
33D CBCA(CO)NH150 mM sodium chloride, 50 mM TRIS, 0.02 % w/v sodium azide, 250 uM [U-100% 13C; U-100% 15N] AstaPo1, 250 uM Astaxanthin95% H2O/5% D2O200 mM7.01 atm298Bruker AVANCE III 800
43D HNHB150 mM sodium chloride, 50 mM TRIS, 0.02 % w/v sodium azide, 250 uM [U-100% 13C; U-100% 15N] AstaPo1, 250 uM Astaxanthin95% H2O/5% D2O200 mM7.01 atm313Bruker AVANCE III 800
182D 1H-13C HSQC aliphatic150 mM sodium chloride, 50 mM TRIS, 0.02 % w/v sodium azide, 250 uM [U-100% 13C; U-100% 15N] AstaPo1, 250 uM Astaxanthin95% H2O/5% D2O200 mM7.01 atm313Bruker AVANCE III 800
192D 1H-15N HSQC150 mM sodium chloride, 50 mM TRIS, 0.02 % w/v sodium azide, 250 uM [U-100% 13C; U-100% 15N] AstaPo1, 250 uM Astaxanthin95% H2O/5% D2O200 mM7.01 atm313Bruker AVANCE III 800
202D 1H-13C HSQC aromatic150 mM sodium chloride, 50 mM TRIS, 0.02 % w/v sodium azide, 250 uM [U-100% 13C; U-100% 15N] AstaPo1, 250 uM Astaxanthin95% H2O/5% D2O200 mM7.01 atm313Bruker AVANCE III 800
232D 1H-13C HSQC aliphatic150 mM sodium chloride, 50 mM TRIS, 0.02 % w/v sodium azide, 250 uM [U-100% 13C; U-100% 15N] AstaPo1, 250 uM Astaxanthin95% H2O/5% D2O200 mM7.01 atm313Bruker AVANCE III 600
222D 1H-15N HSQC150 mM sodium chloride, 50 mM TRIS, 0.02 % w/v sodium azide, 250 uM [U-100% 13C; U-100% 15N] AstaPo1, 250 uM Astaxanthin95% H2O/5% D2O200 mM7.01 atm313Bruker AVANCE III 600
212D 1H-13C HSQC aromatic150 mM sodium chloride, 50 mM TRIS, 0.02 % w/v sodium azide, 250 uM [U-100% 13C; U-100% 15N] AstaPo1, 250 uM Astaxanthin95% H2O/5% D2O200 mM7.01 atm313Bruker AVANCE III 600
53D HNCO150 mM sodium chloride, 50 mM TRIS, 0.02 % w/v sodium azide, 250 uM [U-100% 13C; U-100% 15N] AstaPo1, 250 uM Astaxanthin95% H2O/5% D2O200 mM7.01 atm298Bruker AVANCE III 600
63D 1H-15N NOESY150 mM sodium chloride, 50 mM TRIS, 0.02 % w/v sodium azide, 250 uM [U-100% 13C; U-100% 15N] AstaPo1, 250 uM Astaxanthin95% H2O/5% D2O200 mM7.01 atm298Bruker AVANCE III 600
73D 1H-13C NOESY150 mM sodium chloride, 50 mM TRIS, 0.02 % w/v sodium azide, 250 uM [U-100% 13C; U-100% 15N] AstaPo1, 250 uM Astaxanthin95% H2O/5% D2O200 mM7.01 atm298Bruker AVANCE III 600
83D HN(CA)CO150 mM sodium chloride, 50 mM TRIS, 0.02 % w/v sodium azide, 250 uM [U-100% 13C; U-100% 15N] AstaPo1, 250 uM Astaxanthin95% H2O/5% D2O200 mM7.01 atm298Bruker AVANCE III 600
93D HNCACB150 mM sodium chloride, 50 mM TRIS, 0.02 % w/v sodium azide, 250 uM [U-100% 13C; U-100% 15N] AstaPo1, 250 uM Astaxanthin95% H2O/5% D2O200 mM7.01 atm298Bruker AVANCE III 600
103D HCCH-TOCSY150 mM sodium chloride, 50 mM TRIS, 0.02 % w/v sodium azide, 250 uM [U-100% 13C; U-100% 15N] AstaPo1, 250 uM Astaxanthin95% H2O/5% D2O200 mM7.01 atm298Bruker AVANCE III 600
273D HCCH-COSY150 mM sodium chloride, 50 mM TRIS, 0.02 % w/v sodium azide, 250 uM [U-100% 13C; U-100% 15N] AstaPo1, 250 uM Astaxanthin95% H2O/5% D2O200 mM7.01 atm298Bruker AVANCE III 600
262D 1H-13C HSQC aliphatic150 mM sodium chloride, 50 mM TRIS, 0.02 % w/v sodium azide, 250 uM [U-100% 13C; U-100% 15N] AstaPo1, 250 uM Astaxanthin95% H2O/5% D2O200 mM7.01 atm313Bruker AVANCE III 600
252D 1H-15N HSQC150 mM sodium chloride, 50 mM TRIS, 0.02 % w/v sodium azide, 250 uM [U-100% 13C; U-100% 15N] AstaPo1, 250 uM Astaxanthin95% H2O/5% D2O200 mM7.01 atm313Bruker AVANCE III 600
242D 1H-13C HSQC aromatic150 mM sodium chloride, 50 mM TRIS, 0.02 % w/v sodium azide, 250 uM [U-100% 13C; U-100% 15N] AstaPo1, 250 uM Astaxanthin95% H2O/5% D2O200 mM7.01 atm313Bruker AVANCE III 600
113D 1H-13C NOESY150 mM sodium chloride, 50 mM TRIS, 0.02 % w/v sodium azide, 250 uM [U-100% 13C; U-100% 15N] AstaPo1, 250 uM Astaxanthin95% H2O/5% D2O200 mM7.01 atm313Bruker AVANCE III 600
123D HCCH-TOCSY150 mM sodium chloride, 50 mM TRIS, 0.02 % w/v sodium azide, 250 uM [U-100% 13C; U-100% 15N] AstaPo1, 250 uM Astaxanthin95% H2O/5% D2O200 mM7.01 atm313Bruker AVANCE III 600
133D 1H-15N NOESY150 mM sodium chloride, 50 mM TRIS, 0.02 % w/v sodium azide, 250 uM [U-100% 13C; U-100% 15N] AstaPo1, 250 uM Astaxanthin95% H2O/5% D2O200 mM7.01 atm313Bruker AVANCE III 600
143D HNCO150 mM sodium chloride, 50 mM TRIS, 0.02 % w/v sodium azide, 250 uM [U-100% 13C; U-100% 15N] AstaPo1, 250 uM Astaxanthin95% H2O/5% D2O200 mM7.01 atm313Bruker AVANCE III 600
283D HCCH-COSY150 mM sodium chloride, 50 mM TRIS, 0.02 % w/v sodium azide, 250 uM [U-100% 13C; U-100% 15N] AstaPo1, 250 uM Astaxanthin95% H2O/5% D2O200 mM7.01 atm313Bruker AVANCE III 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III600
2BrukerAVANCE III800
NMR Refinement
MethodDetailsSoftware
torsion angle dynamicsCYANA
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (fewest violations)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementCYANA3.98.13Guntert, Mumenthaler and Wuthrich
2structure calculationCYANA3.98.13Guntert, Mumenthaler and Wuthrich
3chemical shift assignmentCARAKeller and Wuthrich
4peak pickingCARAKeller and Wuthrich
5processingqMDDMayzel, Kazimierczuk, Orekhov
6processingTopSpinBruker Biospin
7data analysisTALOS-NCornilescu, Bax
8data analysisMOLMOLKoradi, Billeter and Wuthrich
9data analysisPyMOLSchrodinger, Inc.