X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.22920.1M HEPES, 1.03M Li2SO4
Crystal Properties
Matthews coefficientSolvent content
2.9958.91

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 79.21α = 90
b = 124.565β = 90
c = 131.292γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 X 2M2022-06-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-20.873128ESRFID23-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.56465.73293.80.9978.212.825858
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.5642.8920.674

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE2.56465.73225858122260.970.2350.2320.285847.927
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.1161.319-0.203
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg19.53
r_dihedral_angle_6_deg16.81
r_dihedral_angle_2_deg14.431
r_lrange_it7.918
r_lrange_other7.918
r_dihedral_angle_1_deg6.066
r_scangle_it5.348
r_scangle_other5.347
r_mcangle_it4.215
r_mcangle_other4.215
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg19.53
r_dihedral_angle_6_deg16.81
r_dihedral_angle_2_deg14.431
r_lrange_it7.918
r_lrange_other7.918
r_dihedral_angle_1_deg6.066
r_scangle_it5.348
r_scangle_other5.347
r_mcangle_it4.215
r_mcangle_other4.215
r_scbond_it3.353
r_scbond_other3.353
r_mcbond_it2.656
r_mcbond_other2.656
r_angle_refined_deg1.888
r_angle_other_deg0.595
r_nbd_refined0.244
r_nbd_other0.217
r_symmetry_nbd_other0.215
r_nbtor_refined0.198
r_symmetry_xyhbond_nbd_refined0.185
r_symmetry_nbd_refined0.164
r_xyhbond_nbd_refined0.13
r_symmetry_nbtor_other0.087
r_chiral_restr0.07
r_symmetry_xyhbond_nbd_other0.046
r_bond_refined_d0.011
r_gen_planes_refined0.007
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6511
Nucleic Acid Atoms
Solvent Atoms7
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing