8BVZ

Spatial structure of amyloidogenic SEM1(49-67) peptide


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.766 mM SEM1(49-67)95% H2O/5% D2O0 mM3.51 atm298Bruker AVANCE III HD 700
22D 1H-1H TOCSY0.766 mM SEM1(49-67)95% H2O/5% D2O0 mM3.51 atm298Bruker AVANCE II 500
32D 1H-1H NOESY0.766 mM SEM1(49-67)95% H2O/5% D2O0 mM3.51 atm298Bruker AVANCE II 500
42D 1H-1H ROESY0.766 mM SEM1(49-67)95% H2O/5% D2O0 mM3.51 atm298Bruker AVANCE II 500
52D 1H-13C HSQC0.766 mM SEM1(49-67)95% H2O/5% D2O0 mM3.51 atm298Bruker AVANCE II 500
62D 1H-13C HMBC0.766 mM SEM1(49-67)95% H2O/5% D2O0 mM3.51 atm298Bruker AVANCE II 500
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE II500
2BrukerAVANCE III HD700
NMR Refinement
MethodDetailsSoftware
molecular dynamicsX-PLOR NIH
NMR Ensemble Information
Conformer Selection Criteriaback calculated data agree with experimental NOESY spectrum
Conformers Calculated Total Number100
Conformers Submitted Total Number15
Representative Model1 (closest to the average)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpin3.2Bruker Biospin
2chemical shift assignmentCcpNmr Analysis3.1CCPN
3processingTopSpin3.2Bruker Biospin
4peak pickingCcpNmr Analysis3.1CCPN
5structure calculationX-PLOR NIHSchwieters, Kuszewski, Tjandra and Clore