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Spatial structure of amyloidogenic SEM1(49-67) peptide
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.766 mM SEM1(49-67) 95% H2O/5% D2O 0 mM 3.5 1 atm 298 Bruker AVANCE III HD 700 2 2D 1H-1H TOCSY 0.766 mM SEM1(49-67) 95% H2O/5% D2O 0 mM 3.5 1 atm 298 Bruker AVANCE II 500 3 2D 1H-1H NOESY 0.766 mM SEM1(49-67) 95% H2O/5% D2O 0 mM 3.5 1 atm 298 Bruker AVANCE II 500 4 2D 1H-1H ROESY 0.766 mM SEM1(49-67) 95% H2O/5% D2O 0 mM 3.5 1 atm 298 Bruker AVANCE II 500 5 2D 1H-13C HSQC 0.766 mM SEM1(49-67) 95% H2O/5% D2O 0 mM 3.5 1 atm 298 Bruker AVANCE II 500 6 2D 1H-13C HMBC 0.766 mM SEM1(49-67) 95% H2O/5% D2O 0 mM 3.5 1 atm 298 Bruker AVANCE II 500
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE II 500 2 Bruker AVANCE III HD 700
NMR Refinement Method Details Software molecular dynamics X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria back calculated data agree with experimental NOESY spectrum Conformers Calculated Total Number 100 Conformers Submitted Total Number 15 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin 3.2 Bruker Biospin 2 chemical shift assignment CcpNmr Analysis 3.1 CCPN 3 processing TopSpin 3.2 Bruker Biospin 4 peak picking CcpNmr Analysis 3.1 CCPN 5 structure calculation X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore