8BOE

Human Carbonic Anhydrase I in complex with (S)-4-(3-(1-(6-nitropyridin-2-yl)pyrrolidin-3-yl)thioureido)benzenesulfonamide


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP82961.5 M sodium citrate, 0.1 M Tris pH 8.0
Crystal Properties
Matthews coefficientSolvent content
2.1442.53

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 42.58α = 90
b = 41.83β = 104.74
c = 72.78γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2022-09-27MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONELETTRA BEAMLINE 11.2C1.00ELETTRA11.2C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.5541.8398.90.0650.0720.99615.75.535726
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.551.58970.0990.110.9859.55.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTNONE4FIK1.5540.32335675181198.5120.1540.15350.172311.002
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.0910.070.27-0.189
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.83
r_dihedral_angle_4_deg23.477
r_dihedral_angle_3_deg11.878
r_dihedral_angle_1_deg7.153
r_lrange_other4.661
r_lrange_it4.65
r_scangle_it3.438
r_scangle_other3.437
r_mcangle_other2.283
r_mcangle_it2.282
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.83
r_dihedral_angle_4_deg23.477
r_dihedral_angle_3_deg11.878
r_dihedral_angle_1_deg7.153
r_lrange_other4.661
r_lrange_it4.65
r_scangle_it3.438
r_scangle_other3.437
r_mcangle_other2.283
r_mcangle_it2.282
r_scbond_it2.243
r_scbond_other2.242
r_angle_refined_deg1.981
r_angle_other_deg1.484
r_mcbond_it1.455
r_mcbond_other1.433
r_nbd_refined0.239
r_symmetry_nbd_refined0.203
r_symmetry_nbd_other0.198
r_nbd_other0.195
r_nbtor_refined0.175
r_symmetry_xyhbond_nbd_refined0.168
r_xyhbond_nbd_refined0.137
r_chiral_restr0.1
r_symmetry_nbtor_other0.084
r_metal_ion_refined0.06
r_bond_refined_d0.013
r_gen_planes_refined0.012
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2040
Nucleic Acid Atoms
Solvent Atoms248
Heterogen Atoms35

Software

Software
Software NamePurpose
REFMACrefinement
iMOSFLMdata reduction
Aimlessdata scaling
RESOLVEphasing