8BO5

COAGULATION FACTOR XI PROTEASE DOMAIN IN COMPLEX WITH ACTIVE SITE INHIBITOR 3


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP2930.1M citrate buffer pH 4.5 and 20-30% PEG4000
Crystal Properties
Matthews coefficientSolvent content
2.244.12

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 58.761α = 90
b = 59.742β = 90
c = 66.929γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2010-11-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM30A0.97887ESRFBM30A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.744.5999.30.0820.99815.766.926387
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Rrim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.750.7420.7522.42

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTin house model1.744.5882638688499.3340.1550.15390.173629.097
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.006-0.189-0.816
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.452
r_dihedral_angle_4_deg19.833
r_dihedral_angle_3_deg13.016
r_dihedral_angle_1_deg7.407
r_lrange_it5.568
r_lrange_other5.436
r_scangle_it3.031
r_scangle_other3.03
r_scbond_it1.921
r_scbond_other1.92
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.452
r_dihedral_angle_4_deg19.833
r_dihedral_angle_3_deg13.016
r_dihedral_angle_1_deg7.407
r_lrange_it5.568
r_lrange_other5.436
r_scangle_it3.031
r_scangle_other3.03
r_scbond_it1.921
r_scbond_other1.92
r_mcangle_it1.83
r_mcangle_other1.829
r_angle_refined_deg1.539
r_angle_other_deg1.429
r_mcbond_it1.192
r_mcbond_other1.183
r_symmetry_nbd_refined0.273
r_nbd_refined0.2
r_nbd_other0.189
r_symmetry_nbd_other0.188
r_nbtor_refined0.17
r_symmetry_xyhbond_nbd_refined0.168
r_xyhbond_nbd_refined0.153
r_symmetry_nbtor_other0.077
r_chiral_restr0.07
r_chiral_restr_other0.044
r_bond_refined_d0.01
r_gen_planes_refined0.008
r_gen_planes_other0.002
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1875
Nucleic Acid Atoms
Solvent Atoms179
Heterogen Atoms58

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing