8BGK
NMR Structure of Big-defensin 5 from oyster Crassostrea gigas
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H TOCSY | 1 mM Cg-BigDef5 | 95% H2O/5% D2O | 0 mM | 4.7 | 1 atm | 298 | Bruker AVANCE III HD 700 700 |
2 | 2D 1H-1H NOESY | 1 mM Cg-BigDef5 | 95% H2O/5% D2O | 0 mM | 4.7 | 1 atm | 298 | Bruker AVANCE III HD 700 700 |
3 | 2D 1H-15N HSQC | 1 mM Cg-BigDef5 | 95% H2O/5% D2O | 0 mM | 4.7 | 1 atm | 298 | Bruker AVANCE III HD 700 700 |
4 | 2D 1H-13C HSQC | 1 mM Cg-BigDef5 | 95% H2O/5% D2O | 0 mM | 4.7 | 1 atm | 298 | Bruker AVANCE III HD 700 700 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III HD 700 | 700 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | ARIA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | Bruker Biospin | |
2 | processing | TopSpin | Bruker Biospin | |
3 | peak picking | CcpNmr Analysis | CCPN | |
4 | structure calculation | ARIA | Linge, O'Donoghue and Nilges |