X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.5277.15100 mM Tris, 22% w/v PEG3350, 200 mM Li2SO4, 250 mM NaCl, 20% v/v glycerol
Crystal Properties
Matthews coefficientSolvent content
2.6553.5

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 90.57α = 90
b = 97.37β = 90
c = 119.24γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 2M2022-06-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE MASSIF-10.96546ESRFMASSIF-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.65099.70.99915.995.569406
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.61.640.648

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE7OM11.648.68569405347199.690.1870.18490.219427.2
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.31-0.6790.989
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg16.806
r_dihedral_angle_3_deg13.13
r_dihedral_angle_1_deg6.874
r_lrange_it6.523
r_lrange_other6.494
r_dihedral_angle_2_deg6.383
r_scangle_it4.908
r_scangle_other4.89
r_mcangle_it3.553
r_mcangle_other3.553
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg16.806
r_dihedral_angle_3_deg13.13
r_dihedral_angle_1_deg6.874
r_lrange_it6.523
r_lrange_other6.494
r_dihedral_angle_2_deg6.383
r_scangle_it4.908
r_scangle_other4.89
r_mcangle_it3.553
r_mcangle_other3.553
r_scbond_it3.297
r_scbond_other3.279
r_mcbond_it2.496
r_mcbond_other2.488
r_angle_refined_deg1.874
r_angle_other_deg0.612
r_nbd_refined0.223
r_symmetry_nbd_refined0.213
r_symmetry_nbd_other0.199
r_nbtor_refined0.181
r_nbd_other0.153
r_xyhbond_nbd_refined0.133
r_symmetry_xyhbond_nbd_refined0.104
r_symmetry_nbtor_other0.084
r_chiral_restr0.079
r_bond_refined_d0.011
r_gen_planes_refined0.011
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3308
Nucleic Acid Atoms
Solvent Atoms200
Heterogen Atoms108

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing