☰ Navigation Tabs
Crystal structure of a Fab fragment in complex with L-hydroxycoumarylalanine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1JPT 1JPT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 293 polyethylene glycol 6000, magnesium chloride
Crystal Properties Matthews coefficient Solvent content 2.72 54.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.914 α = 90 b = 70.914 β = 90 c = 91.043 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD Si mirror 2010-05-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.91841 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.67 61.413 96.3 0.095 0.111 0.056 7.1 3.6 57236 57236
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.67 1.76 77.6 0.748 0.748 0.898 0.49 1 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1JPT 1.67 36.6 54280 2919 96.3 0.1922 0.1907 0.221 0.2578 RANDOM 38.659
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.2 0.6 1.2 -3.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.53 r_dihedral_angle_4_deg 17.493 r_dihedral_angle_3_deg 12.218 r_dihedral_angle_1_deg 7.572 r_angle_refined_deg 1.591 r_angle_other_deg 1.303 r_chiral_restr 0.074 r_bond_refined_d 0.009 r_gen_planes_refined 0.009 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.53 r_dihedral_angle_4_deg 17.493 r_dihedral_angle_3_deg 12.218 r_dihedral_angle_1_deg 7.572 r_angle_refined_deg 1.591 r_angle_other_deg 1.303 r_chiral_restr 0.074 r_bond_refined_d 0.009 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3320 Nucleic Acid Atoms Solvent Atoms 261 Heterogen Atoms 24
Software Software Software Name Purpose XDS data reduction SCALA data scaling BALBES phasing REFMAC refinement PDB_EXTRACT data extraction