8B4S

Antimicrobial peptide capitellacin from polychaeta Capitella teleta in DPC (dodecylphosphocholine) micelles, dimeric form


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D NOESY2 mg/mL capitellacin, 168 mM DPC, 5 % v/v [U-99% 2H] D2O95% H2O/5% D2O0.001 M5.4AMBIENT Pa318Bruker AVANCE III 600
22D 1H-1H TOCSY2 mg/mL capitellacin, 168 mM DPC, 5 % v/v [U-99% 2H] D2O95% H2O/5% D2O0.001 M5.4AMBIENT Pa318Bruker AVANCE III 600
32D 1H-13C HSQC aliphatic2 mg/mL capitellacin, 168 mM DPC, 5 % v/v [U-99% 2H] D2O95% H2O/5% D2O0.001 M5.4AMBIENT Pa318Bruker AVANCE III 600
42D 1H-13C HSQC aromatic2 mg/mL capitellacin, 168 mM DPC, 5 % v/v [U-99% 2H] D2O95% H2O/5% D2O0.001 M5.4AMBIENT Pa318Bruker AVANCE III 600
52D 1H-15N HSQC2 mg/mL capitellacin, 168 mM DPC, 5 % v/v [U-99% 2H] D2O95% H2O/5% D2O0.001 M5.4AMBIENT Pa318Bruker AVANCE III 800
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III600
2BrukerAVANCE III800
NMR Refinement
MethodDetailsSoftware
simulated annealingCYANA
simulated annealingCYANA
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (target function)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementCYANA3.98.13Guntert, Mumenthaler and Wuthrich
2structure calculationCYANA3.98.13Guntert, Mumenthaler and Wuthrich
3collectionTopSpin3.0Bruker Biospin
4chemical shift assignmentCARA1.9.1.7Keller and Wuthrich
5peak pickingCARA1.9.1.7Keller and Wuthrich