8B4S
Antimicrobial peptide capitellacin from polychaeta Capitella teleta in DPC (dodecylphosphocholine) micelles, dimeric form
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 2 mg/mL capitellacin, 168 mM DPC, 5 % v/v [U-99% 2H] D2O | 95% H2O/5% D2O | 0.001 M | 5.4 | AMBIENT Pa | 318 | Bruker AVANCE III 600 |
2 | 2D 1H-1H TOCSY | 2 mg/mL capitellacin, 168 mM DPC, 5 % v/v [U-99% 2H] D2O | 95% H2O/5% D2O | 0.001 M | 5.4 | AMBIENT Pa | 318 | Bruker AVANCE III 600 |
3 | 2D 1H-13C HSQC aliphatic | 2 mg/mL capitellacin, 168 mM DPC, 5 % v/v [U-99% 2H] D2O | 95% H2O/5% D2O | 0.001 M | 5.4 | AMBIENT Pa | 318 | Bruker AVANCE III 600 |
4 | 2D 1H-13C HSQC aromatic | 2 mg/mL capitellacin, 168 mM DPC, 5 % v/v [U-99% 2H] D2O | 95% H2O/5% D2O | 0.001 M | 5.4 | AMBIENT Pa | 318 | Bruker AVANCE III 600 |
5 | 2D 1H-15N HSQC | 2 mg/mL capitellacin, 168 mM DPC, 5 % v/v [U-99% 2H] D2O | 95% H2O/5% D2O | 0.001 M | 5.4 | AMBIENT Pa | 318 | Bruker AVANCE III 800 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 600 |
2 | Bruker | AVANCE III | 800 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | CYANA | |
simulated annealing | CYANA |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (target function) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | CYANA | 3.98.13 | Guntert, Mumenthaler and Wuthrich |
2 | structure calculation | CYANA | 3.98.13 | Guntert, Mumenthaler and Wuthrich |
3 | collection | TopSpin | 3.0 | Bruker Biospin |
4 | chemical shift assignment | CARA | 1.9.1.7 | Keller and Wuthrich |
5 | peak picking | CARA | 1.9.1.7 | Keller and Wuthrich |