8B4R

Antimicrobial peptide capitellacin from polychaeta Capitella teleta in DPC (dodecylphosphocholine) micelles, monomeric form


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D NOESY0.84 mM capitellacin, 10 % [U-99% 2H] D2O, 100 % water, 168 mM DPC95% H2O/5% D2O0.001 M5.4AMBIENT Pa318Bruker AVANCE III 600
22D TOCSY0.84 mM capitellacin, 10 % [U-99% 2H] D2O, 100 % water, 168 mM DPC95% H2O/5% D2O0.001 M5.4AMBIENT Pa318Bruker AVANCE III 600
32D 1H-13C HSQC aliphatic0.84 mM capitellacin, 10 % [U-99% 2H] D2O, 100 % water, 168 mM DPC95% H2O/5% D2O0.001 M5.4AMBIENT Pa318Bruker AVANCE III 600
42D 1H-13C HSQC aromatic0.84 mM capitellacin, 10 % [U-99% 2H] D2O, 100 % water, 168 mM DPC95% H2O/5% D2O0.001 M5.4AMBIENT Pa318Bruker AVANCE III 600
53D 1H-15N NOESY0.07 mM [U-15N] capitellacin, 5 % [U-99% 2H] D2O, 14 mM DPC95% H2O/5% D2O0.001 M5.4AMBIENT Pa318Bruker AVANCE III 800
63D HCCH-TOCSY0.07 mM [U-15N] capitellacin, 5 % [U-99% 2H] D2O, 14 mM DPC95% H2O/5% D2O0.001 M5.4AMBIENT Pa318Bruker AVANCE III 800
73D 1H-13C NOESY0.07 mM [U-15N] capitellacin, 5 % [U-99% 2H] D2O, 14 mM DPC95% H2O/5% D2O0.001 M5.4AMBIENT Pa318Bruker AVANCE III 800
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III800
2BrukerAVANCE III600
NMR Refinement
MethodDetailsSoftware
simulated annealingCYANA
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (target function)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementCYANA3.98.13Guntert, Mumenthaler and Wuthrich
2structure calculationCYANA3.98.13Guntert, Mumenthaler and Wuthrich
3chemical shift assignmentCARAKeller and Wuthrich
4peak pickingCARAKeller and Wuthrich
5collectionTopSpinBruker Biospin